Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TRAV1-1A0A0B4J248 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 MIR4508-201ENST00000584178 70 ntBASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 BX005040.4-201ENST00000637145 1518 ntBASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV1-1A0A0B4J248 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 BEX3-202ENST00000372634 753 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 OR2I1P-207ENST00000453522 948 ntBASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV1-1A0A0B4J248 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV1-1A0A0B4J248 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TRAV1-1A0A0B4J248 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV1-1A0A0B4J248 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.02■□□□□ 0.16
TRAV1-1A0A0B4J248 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV1-1A0A0B4J248 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TRAV1-1A0A0B4J248 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
TRAV1-1A0A0B4J248 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV1-1A0A0B4J248 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC16.02■□□□□ 0.16
TRAV1-1A0A0B4J248 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
TRAV1-1A0A0B4J248 AL138781.2-201ENST00000617896 1843 ntBASIC16.02■□□□□ 0.16
TRAV1-1A0A0B4J248 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC16.02■□□□□ 0.15
TRAV1-1A0A0B4J248 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
TRAV1-1A0A0B4J248 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV1-1A0A0B4J248 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC16.02■□□□□ 0.15
TRAV1-1A0A0B4J248 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC16.02■□□□□ 0.15
TRAV1-1A0A0B4J248 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 AC021242.3-201ENST00000607598 1377 ntBASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV1-1A0A0B4J248 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms