Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 BX276092.2-201ENST00000417668 665 ntBASIC23.61■■□□□ 1.37
DDX41Q9UJV9 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.61■■□□□ 1.37
DDX41Q9UJV9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 AC007952.6-201ENST00000573168 2673 ntBASIC23.6■■□□□ 1.37
DDX41Q9UJV9 AC003957.1-201ENST00000625108 2673 ntBASIC23.6■■□□□ 1.37
DDX41Q9UJV9 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.6■■□□□ 1.37
DDX41Q9UJV9 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 AC091799.1-201ENST00000422823 811 ntBASIC23.59■■□□□ 1.37
DDX41Q9UJV9 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC23.59■■□□□ 1.37
DDX41Q9UJV9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC23.58■■□□□ 1.37
DDX41Q9UJV9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
DDX41Q9UJV9 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
DDX41Q9UJV9 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.58■■□□□ 1.37
DDX41Q9UJV9 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
DDX41Q9UJV9 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
DDX41Q9UJV9 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.58■■□□□ 1.37
DDX41Q9UJV9 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC23.58■■□□□ 1.37
DDX41Q9UJV9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
DDX41Q9UJV9 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
DDX41Q9UJV9 AC005229.4-201ENST00000610085 2198 ntBASIC23.58■■□□□ 1.36
DDX41Q9UJV9 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
DDX41Q9UJV9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.58■■□□□ 1.36
DDX41Q9UJV9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
DDX41Q9UJV9 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 MYC-209ENST00000641252 345 ntBASIC23.56■■□□□ 1.36
DDX41Q9UJV9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
DDX41Q9UJV9 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms