Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23■■□□□ 1.27
UPF3AQ9H1J1 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC23■■□□□ 1.27
UPF3AQ9H1J1 RPS2P55-201ENST00000397318 883 ntBASIC23■■□□□ 1.27
UPF3AQ9H1J1 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
UPF3AQ9H1J1 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC23■■□□□ 1.27
UPF3AQ9H1J1 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC23■■□□□ 1.27
UPF3AQ9H1J1 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
UPF3AQ9H1J1 AC107956.1-201ENST00000494359 873 ntBASIC23■■□□□ 1.27
UPF3AQ9H1J1 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
UPF3AQ9H1J1 LY6E-205ENST00000519611 635 ntTSL 3 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC23■■□□□ 1.27
UPF3AQ9H1J1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
UPF3AQ9H1J1 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 SERP1-205ENST00000487153 657 ntTSL 4 BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 AC120498.8-201ENST00000614275 531 ntBASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
UPF3AQ9H1J1 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 RPS20-210ENST00000523936 899 ntTSL 2 BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 REXO2-216ENST00000544196 452 ntTSL 3 BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 AC005829.2-201ENST00000571422 1056 ntBASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.98■■□□□ 1.27
UPF3AQ9H1J1 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 THEM4-205ENST00000489410 643 ntTSL 2 BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
UPF3AQ9H1J1 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 FAM210CP-201ENST00000445714 574 ntBASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 ABHD17AP6-201ENST00000458502 1044 ntBASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 BRWD1-AS2-201ENST00000603064 1028 ntBASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.96■■□□□ 1.27
UPF3AQ9H1J1 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
UPF3AQ9H1J1 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
UPF3AQ9H1J1 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
UPF3AQ9H1J1 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms