Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
NKX2-3Q8TAU0 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NKX2-3Q8TAU0 MKRN4P-201ENST00000444706 1521 ntBASIC24.45■■□□□ 1.5
NKX2-3Q8TAU0 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC24.45■■□□□ 1.5
NKX2-3Q8TAU0 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NKX2-3Q8TAU0 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 ESRRAP1-201ENST00000400596 1257 ntBASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 BET1L-204ENST00000410108 637 ntTSL 3 BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 PTPA-214ENST00000423100 988 ntTSL 2 BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 AL158047.1-201ENST00000445918 881 ntBASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 AC245052.3-201ENST00000450182 901 ntBASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC24.44■■□□□ 1.5
NKX2-3Q8TAU0 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 AC092118.2-201ENST00000613495 667 ntBASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 MARS-234ENST00000630571 216 ntTSL 5 BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 MARS-235ENST00000630803 183 ntTSL 3 BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NKX2-3Q8TAU0 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 PALM-208ENST00000592155 2272 ntTSL 4 BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NKX2-3Q8TAU0 USP48-205ENST00000421625 2818 ntTSL 2 BASIC24.41■■□□□ 1.5
NKX2-3Q8TAU0 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
NKX2-3Q8TAU0 VMO1-204ENST00000441199 741 ntTSL 2 BASIC24.41■■□□□ 1.5
NKX2-3Q8TAU0 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC24.41■■□□□ 1.5
NKX2-3Q8TAU0 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC24.41■■□□□ 1.5
NKX2-3Q8TAU0 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
NKX2-3Q8TAU0 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
NKX2-3Q8TAU0 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
NKX2-3Q8TAU0 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NKX2-3Q8TAU0 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC24.39■■□□□ 1.5
NKX2-3Q8TAU0 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
NKX2-3Q8TAU0 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
NKX2-3Q8TAU0 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC24.39■■□□□ 1.5
NKX2-3Q8TAU0 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
NKX2-3Q8TAU0 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC24.39■■□□□ 1.5
NKX2-3Q8TAU0 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 AL591742.1-201ENST00000604433 565 ntBASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
NKX2-3Q8TAU0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms