Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 AC012313.1-201ENST00000593393 3059 ntBASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 AL512408.1-201ENST00000569378 2000 ntBASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 AC011270.2-201ENST00000624293 2550 ntBASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN3Q8NCR9 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 AC005332.7-201ENST00000614046 2005 ntBASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 PLK5-205ENST00000642079 1969 ntBASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN3Q8NCR9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.22
CLRN3Q8NCR9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
CLRN3Q8NCR9 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN3Q8NCR9 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms