Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 U85056.1-201ENST00000616429 682 ntBASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC28AQ8IWP9 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 RPS2P7-201ENST00000447334 885 ntBASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC28AQ8IWP9 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 AC131274.2-201ENST00000580697 1507 ntBASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 AL592295.1-201ENST00000400984 884 ntBASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 IDNK-203ENST00000405990 629 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC28AQ8IWP9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 DUX4L9-201ENST00000449051 1259 ntBASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 NTF6A-201ENST00000591175 560 ntBASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms