Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 AL022069.1-201ENST00000568025 1636 ntBASIC12.91□□□□□ -0.34
LINC00643Q86TS7 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC00643Q86TS7 AC090877.2-201ENST00000558441 1738 ntBASIC12.91□□□□□ -0.34
LINC00643Q86TS7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 RPS2-209ENST00000529806 993 ntTSL 3 BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
LINC00643Q86TS7 AC018470.1-201ENST00000624790 3129 ntBASIC12.9□□□□□ -0.34
LINC00643Q86TS7 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
LINC00643Q86TS7 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
LINC00643Q86TS7 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.35
LINC00643Q86TS7 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.35
LINC00643Q86TS7 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 AL390961.4-201ENST00000623958 2535 ntBASIC12.89□□□□□ -0.35
LINC00643Q86TS7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC12.89□□□□□ -0.35
LINC00643Q86TS7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms