Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.56■□□□□ 0.72
RAE1P78406 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
RAE1P78406 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RAE1P78406 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.56■□□□□ 0.72
RAE1P78406 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.56■□□□□ 0.72
RAE1P78406 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RAE1P78406 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RAE1P78406 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RAE1P78406 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RAE1P78406 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RAE1P78406 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RAE1P78406 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
RAE1P78406 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RAE1P78406 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RAE1P78406 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RAE1P78406 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RAE1P78406 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
RAE1P78406 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.55■□□□□ 0.72
RAE1P78406 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RAE1P78406 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
RAE1P78406 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RAE1P78406 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.55■□□□□ 0.72
RAE1P78406 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RAE1P78406 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
RAE1P78406 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
RAE1P78406 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
RAE1P78406 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
RAE1P78406 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.54■□□□□ 0.72
RAE1P78406 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.54■□□□□ 0.72
RAE1P78406 MIR2861-201ENST00000636310 90 ntBASIC19.54■□□□□ 0.72
RAE1P78406 MYCNOS-205ENST00000641950 531 ntBASIC19.54■□□□□ 0.72
RAE1P78406 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.54■□□□□ 0.72
RAE1P78406 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
RAE1P78406 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 AL512408.1-201ENST00000569378 2000 ntBASIC19.54■□□□□ 0.72
RAE1P78406 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RAE1P78406 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
RAE1P78406 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 AL162377.1-201ENST00000618844 1793 ntBASIC19.53■□□□□ 0.72
RAE1P78406 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
RAE1P78406 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.53■□□□□ 0.72
RAE1P78406 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.53■□□□□ 0.72
RAE1P78406 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.53■□□□□ 0.72
RAE1P78406 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
RAE1P78406 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
RAE1P78406 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.53■□□□□ 0.72
RAE1P78406 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RAE1P78406 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.53■□□□□ 0.72
RAE1P78406 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RAE1P78406 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.52■□□□□ 0.72
RAE1P78406 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RAE1P78406 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RAE1P78406 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.52■□□□□ 0.72
RAE1P78406 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RAE1P78406 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.52■□□□□ 0.72
RAE1P78406 AC026271.2-201ENST00000428091 497 ntBASIC19.52■□□□□ 0.72
RAE1P78406 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.52■□□□□ 0.72
RAE1P78406 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.52■□□□□ 0.72
RAE1P78406 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.52■□□□□ 0.72
RAE1P78406 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
RAE1P78406 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
RAE1P78406 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
RAE1P78406 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RAE1P78406 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
RAE1P78406 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RAE1P78406 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
RAE1P78406 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RAE1P78406 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
RAE1P78406 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
RAE1P78406 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.52■□□□□ 0.71
RAE1P78406 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RAE1P78406 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.51■□□□□ 0.71
RAE1P78406 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
RAE1P78406 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
RAE1P78406 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RAE1P78406 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.51■□□□□ 0.71
RAE1P78406 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RAE1P78406 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms