Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
VCPP55072 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VCPP55072 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
VCPP55072 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.98■■□□□ 1.11
VCPP55072 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VCPP55072 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VCPP55072 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.97■■□□□ 1.11
VCPP55072 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VCPP55072 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VCPP55072 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
VCPP55072 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
VCPP55072 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
VCPP55072 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VCPP55072 AC003102.1-202ENST00000563394 1796 ntBASIC21.97■■□□□ 1.11
VCPP55072 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
VCPP55072 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.96■■□□□ 1.11
VCPP55072 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 BX276092.2-201ENST00000417668 665 ntBASIC21.96■■□□□ 1.11
VCPP55072 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 AC016405.3-201ENST00000607710 860 ntBASIC21.96■■□□□ 1.11
VCPP55072 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
VCPP55072 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.96■■□□□ 1.11
VCPP55072 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCPP55072 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
VCPP55072 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.95■■□□□ 1.1
VCPP55072 AC010141.2-201ENST00000452426 721 ntBASIC21.95■■□□□ 1.1
VCPP55072 AC097658.1-201ENST00000475555 843 ntBASIC21.95■■□□□ 1.1
VCPP55072 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.95■■□□□ 1.1
VCPP55072 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.95■■□□□ 1.1
VCPP55072 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
VCPP55072 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.95■■□□□ 1.1
VCPP55072 AC073648.6-201ENST00000641589 218 ntBASIC21.95■■□□□ 1.1
VCPP55072 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
VCPP55072 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.95■■□□□ 1.1
VCPP55072 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.95■■□□□ 1.1
VCPP55072 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
VCPP55072 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCPP55072 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCPP55072 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCPP55072 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCPP55072 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.94■■□□□ 1.1
VCPP55072 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.94■■□□□ 1.1
VCPP55072 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCPP55072 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.94■■□□□ 1.1
VCPP55072 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.94■■□□□ 1.1
VCPP55072 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCPP55072 AC211429.1-201ENST00000415277 523 ntBASIC21.94■■□□□ 1.1
VCPP55072 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.94■■□□□ 1.1
VCPP55072 AC138907.5-202ENST00000569484 235 ntBASIC21.94■■□□□ 1.1
VCPP55072 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.94■■□□□ 1.1
VCPP55072 OR10C1-204ENST00000622521 1039 ntBASIC21.94■■□□□ 1.1
VCPP55072 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VCPP55072 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
VCPP55072 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
VCPP55072 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCPP55072 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCPP55072 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCPP55072 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VCPP55072 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
VCPP55072 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VCPP55072 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.93■■□□□ 1.1
VCPP55072 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.93■■□□□ 1.1
VCPP55072 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
VCPP55072 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VCPP55072 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VCPP55072 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.93■■□□□ 1.1
VCPP55072 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VCPP55072 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VCPP55072 TERF1P5-201ENST00000477545 1207 ntBASIC21.93■■□□□ 1.1
VCPP55072 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.93■■□□□ 1.1
VCPP55072 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.93■■□□□ 1.1
VCPP55072 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.93■■□□□ 1.1
VCPP55072 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.93■■□□□ 1.1
VCPP55072 EEF1DP3-203ENST00000566025 782 ntBASIC21.93■■□□□ 1.1
VCPP55072 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.93■■□□□ 1.1
VCPP55072 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VCPP55072 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VCPP55072 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms