Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HNF4AP41235 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HNF4AP41235 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HNF4AP41235 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.91■□□□□ 0.78
HNF4AP41235 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HNF4AP41235 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
HNF4AP41235 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.91■□□□□ 0.78
HNF4AP41235 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HNF4AP41235 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HNF4AP41235 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
HNF4AP41235 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HNF4AP41235 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.9■□□□□ 0.78
HNF4AP41235 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.9■□□□□ 0.78
HNF4AP41235 AC243732.1-201ENST00000612648 864 ntBASIC19.9■□□□□ 0.78
HNF4AP41235 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
HNF4AP41235 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.9■□□□□ 0.78
HNF4AP41235 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.9■□□□□ 0.78
HNF4AP41235 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.9■□□□□ 0.78
HNF4AP41235 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
HNF4AP41235 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HNF4AP41235 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.78
HNF4AP41235 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.89■□□□□ 0.77
HNF4AP41235 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.89■□□□□ 0.77
HNF4AP41235 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.89■□□□□ 0.77
HNF4AP41235 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.89■□□□□ 0.77
HNF4AP41235 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HNF4AP41235 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.89■□□□□ 0.77
HNF4AP41235 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.89■□□□□ 0.77
HNF4AP41235 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HNF4AP41235 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.89■□□□□ 0.77
HNF4AP41235 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.89■□□□□ 0.77
HNF4AP41235 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HNF4AP41235 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.89■□□□□ 0.77
HNF4AP41235 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HNF4AP41235 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HNF4AP41235 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HNF4AP41235 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HNF4AP41235 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HNF4AP41235 FEM1AP1-201ENST00000431297 1995 ntBASIC19.88■□□□□ 0.77
HNF4AP41235 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HNF4AP41235 AC007225.1-201ENST00000566331 1836 ntBASIC19.88■□□□□ 0.77
HNF4AP41235 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HNF4AP41235 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
HNF4AP41235 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.88■□□□□ 0.77
HNF4AP41235 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HNF4AP41235 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
HNF4AP41235 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HNF4AP41235 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.88■□□□□ 0.77
HNF4AP41235 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.88■□□□□ 0.77
HNF4AP41235 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
HNF4AP41235 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.88■□□□□ 0.77
HNF4AP41235 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
HNF4AP41235 MYCNOS-205ENST00000641950 531 ntBASIC19.88■□□□□ 0.77
HNF4AP41235 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.88■□□□□ 0.77
HNF4AP41235 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.88■□□□□ 0.77
HNF4AP41235 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HNF4AP41235 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HNF4AP41235 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HNF4AP41235 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HNF4AP41235 AC116050.2-201ENST00000612102 1779 ntBASIC19.88■□□□□ 0.77
HNF4AP41235 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.87■□□□□ 0.77
HNF4AP41235 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
HNF4AP41235 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HNF4AP41235 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.87■□□□□ 0.77
HNF4AP41235 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HNF4AP41235 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HNF4AP41235 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.87■□□□□ 0.77
HNF4AP41235 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HNF4AP41235 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.87■□□□□ 0.77
HNF4AP41235 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
HNF4AP41235 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HNF4AP41235 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.87■□□□□ 0.77
HNF4AP41235 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.87■□□□□ 0.77
HNF4AP41235 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.87■□□□□ 0.77
HNF4AP41235 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HNF4AP41235 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HNF4AP41235 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
HNF4AP41235 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HNF4AP41235 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HNF4AP41235 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HNF4AP41235 RBM17P2-201ENST00000616397 1405 ntBASIC19.86■□□□□ 0.77
HNF4AP41235 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HNF4AP41235 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HNF4AP41235 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HNF4AP41235 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HNF4AP41235 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
HNF4AP41235 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HNF4AP41235 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HNF4AP41235 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms