Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.8■■□□□ 1.08
COL6A3P12111 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL6A3P12111 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
COL6A3P12111 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.8■■□□□ 1.08
COL6A3P12111 LINC01238-205ENST00000567549 1107 ntBASIC21.8■■□□□ 1.08
COL6A3P12111 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL6A3P12111 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL6A3P12111 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL6A3P12111 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.79■■□□□ 1.08
COL6A3P12111 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.79■■□□□ 1.08
COL6A3P12111 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL6A3P12111 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.79■■□□□ 1.08
COL6A3P12111 LINC00526-201ENST00000581067 1875 ntBASIC21.79■■□□□ 1.08
COL6A3P12111 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL6A3P12111 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL6A3P12111 NAPSB-206ENST00000562112 1266 ntBASIC21.79■■□□□ 1.08
COL6A3P12111 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.79■■□□□ 1.08
COL6A3P12111 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL6A3P12111 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.79■■□□□ 1.08
COL6A3P12111 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.79■■□□□ 1.08
COL6A3P12111 DUSP8P4-201ENST00000399538 1761 ntBASIC21.78■■□□□ 1.08
COL6A3P12111 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
COL6A3P12111 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A3P12111 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A3P12111 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
COL6A3P12111 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A3P12111 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A3P12111 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A3P12111 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
COL6A3P12111 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC21.78■■□□□ 1.08
COL6A3P12111 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.78■■□□□ 1.08
COL6A3P12111 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.78■■□□□ 1.08
COL6A3P12111 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A3P12111 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
COL6A3P12111 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.77■■□□□ 1.08
COL6A3P12111 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A3P12111 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A3P12111 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A3P12111 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.77■■□□□ 1.08
COL6A3P12111 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A3P12111 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A3P12111 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A3P12111 FAM86EP-206ENST00000510506 987 ntBASIC21.77■■□□□ 1.08
COL6A3P12111 AL671883.3-201ENST00000603274 991 ntBASIC21.77■■□□□ 1.08
COL6A3P12111 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.77■■□□□ 1.08
COL6A3P12111 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A3P12111 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A3P12111 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
COL6A3P12111 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
COL6A3P12111 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.77■■□□□ 1.07
COL6A3P12111 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.77■■□□□ 1.07
COL6A3P12111 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL6A3P12111 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
COL6A3P12111 AC004812.2-201ENST00000611079 2094 ntBASIC21.76■■□□□ 1.07
COL6A3P12111 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.76■■□□□ 1.07
COL6A3P12111 CR769767.2-201ENST00000622735 460 ntBASIC21.76■■□□□ 1.07
COL6A3P12111 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL6A3P12111 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL6A3P12111 LIN28AP1-201ENST00000429574 405 ntBASIC21.75■■□□□ 1.07
COL6A3P12111 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL6A3P12111 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL6A3P12111 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL6A3P12111 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.75■■□□□ 1.07
COL6A3P12111 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.75■■□□□ 1.07
COL6A3P12111 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.75■■□□□ 1.07
COL6A3P12111 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL6A3P12111 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
COL6A3P12111 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL6A3P12111 HTR7P1-201ENST00000538670 1336 ntBASIC21.74■■□□□ 1.07
COL6A3P12111 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL6A3P12111 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
COL6A3P12111 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.74■■□□□ 1.07
COL6A3P12111 SLC25A1P4-201ENST00000567977 778 ntBASIC21.74■■□□□ 1.07
COL6A3P12111 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL6A3P12111 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.74■■□□□ 1.07
COL6A3P12111 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL6A3P12111 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL6A3P12111 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.74■■□□□ 1.07
COL6A3P12111 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL6A3P12111 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.74■■□□□ 1.07
COL6A3P12111 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL6A3P12111 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A3P12111 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A3P12111 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.73■■□□□ 1.07
COL6A3P12111 FAM207BP-201ENST00000447172 505 ntBASIC21.73■■□□□ 1.07
COL6A3P12111 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.73■■□□□ 1.07
COL6A3P12111 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.73■■□□□ 1.07
COL6A3P12111 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.73■■□□□ 1.07
COL6A3P12111 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
COL6A3P12111 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A3P12111 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A3P12111 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
COL6A3P12111 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
COL6A3P12111 KRT16P5-201ENST00000455284 522 ntBASIC21.73■■□□□ 1.07
COL6A3P12111 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.73■■□□□ 1.07
COL6A3P12111 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A3P12111 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A3P12111 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A3P12111 AC116407.4-201ENST00000623319 1061 ntBASIC21.73■■□□□ 1.07
COL6A3P12111 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms