Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SMKR1H3BMG3 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
SMKR1H3BMG3 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SMKR1H3BMG3 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
SMKR1H3BMG3 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SMKR1H3BMG3 AC120498.9-201ENST00000339021 3867 ntBASIC15.02□□□□□ -0.01
SMKR1H3BMG3 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SMKR1H3BMG3 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SMKR1H3BMG3 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SMKR1H3BMG3 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SMKR1H3BMG3 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SMKR1H3BMG3 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 AC010997.5-201ENST00000609182 354 ntBASIC15.01□□□□□ -0.01
SMKR1H3BMG3 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 AP006587.3-201ENST00000525742 1516 ntBASIC15.01□□□□□ -0.01
SMKR1H3BMG3 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 AC020763.4-201ENST00000623414 4170 ntBASIC15.01□□□□□ -0.01
SMKR1H3BMG3 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
SMKR1H3BMG3 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
SMKR1H3BMG3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC15□□□□□ -0.01
SMKR1H3BMG3 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
SMKR1H3BMG3 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC15□□□□□ -0.01
SMKR1H3BMG3 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC15□□□□□ -0.01
SMKR1H3BMG3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 AL033527.3-201ENST00000566366 1196 ntBASIC15□□□□□ -0.01
SMKR1H3BMG3 AC010525.1-201ENST00000585559 441 ntBASIC15□□□□□ -0.01
SMKR1H3BMG3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC15□□□□□ -0.01
SMKR1H3BMG3 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15□□□□□ -0.01
SMKR1H3BMG3 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
SMKR1H3BMG3 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
SMKR1H3BMG3 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
SMKR1H3BMG3 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC15□□□□□ -0.01
SMKR1H3BMG3 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 GATM-206ENST00000558336 1522 ntTSL 2 BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 TSPY9P-201ENST00000440215 945 ntBASIC14.99□□□□□ -0.01
SMKR1H3BMG3 TSPY11P-201ENST00000442607 1045 ntBASIC14.99□□□□□ -0.01
SMKR1H3BMG3 KRT125P-201ENST00000546827 989 ntBASIC14.99□□□□□ -0.01
SMKR1H3BMG3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SMKR1H3BMG3 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 LSM4-201ENST00000252816 986 ntTSL 2 BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 OR2I1P-207ENST00000453522 948 ntBASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms