Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS29Q9UBQ0 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 KRT19P1-201ENST00000405746 1186 ntBASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
VPS29Q9UBQ0 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 AC027702.1-201ENST00000563810 1770 ntBASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 SLC7A5P1-201ENST00000568957 537 ntBASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS29Q9UBQ0 AC116050.2-201ENST00000612102 1779 ntBASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS29Q9UBQ0 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms