Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX56Q9NY93 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX56Q9NY93 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX56Q9NY93 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX56Q9NY93 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX56Q9NY93 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX56Q9NY93 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.46■■□□□ 1.03
DDX56Q9NY93 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
DDX56Q9NY93 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
DDX56Q9NY93 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
DDX56Q9NY93 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX56Q9NY93 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.45■■□□□ 1.02
DDX56Q9NY93 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
DDX56Q9NY93 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
DDX56Q9NY93 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX56Q9NY93 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX56Q9NY93 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.45■■□□□ 1.02
DDX56Q9NY93 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.45■■□□□ 1.02
DDX56Q9NY93 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
DDX56Q9NY93 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
DDX56Q9NY93 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
DDX56Q9NY93 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
DDX56Q9NY93 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX56Q9NY93 AC116050.2-201ENST00000612102 1779 ntBASIC21.44■■□□□ 1.02
DDX56Q9NY93 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX56Q9NY93 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 ZNRF2P3-201ENST00000424200 374 ntBASIC21.44■■□□□ 1.02
DDX56Q9NY93 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX56Q9NY93 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX56Q9NY93 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.44■■□□□ 1.02
DDX56Q9NY93 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
DDX56Q9NY93 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
DDX56Q9NY93 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
DDX56Q9NY93 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
DDX56Q9NY93 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
DDX56Q9NY93 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
DDX56Q9NY93 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
DDX56Q9NY93 AC004854.2-201ENST00000608450 1441 ntBASIC21.43■■□□□ 1.02
DDX56Q9NY93 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
DDX56Q9NY93 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
DDX56Q9NY93 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
DDX56Q9NY93 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
DDX56Q9NY93 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
DDX56Q9NY93 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
DDX56Q9NY93 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.42■■□□□ 1.02
DDX56Q9NY93 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
DDX56Q9NY93 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
DDX56Q9NY93 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
DDX56Q9NY93 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
DDX56Q9NY93 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.42■■□□□ 1.02
DDX56Q9NY93 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.42■■□□□ 1.02
DDX56Q9NY93 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.42■■□□□ 1.02
DDX56Q9NY93 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
DDX56Q9NY93 SLC7A5P1-201ENST00000568957 537 ntBASIC21.42■■□□□ 1.02
DDX56Q9NY93 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
DDX56Q9NY93 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
DDX56Q9NY93 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.42■■□□□ 1.02
DDX56Q9NY93 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
DDX56Q9NY93 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX56Q9NY93 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
DDX56Q9NY93 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
DDX56Q9NY93 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
DDX56Q9NY93 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX56Q9NY93 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX56Q9NY93 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 AC243732.1-201ENST00000612648 864 ntBASIC21.41■■□□□ 1.02
DDX56Q9NY93 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
DDX56Q9NY93 SLC25A24-204ENST00000569674 2357 ntBASIC21.41■■□□□ 1.02
DDX56Q9NY93 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX56Q9NY93 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms