Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 AL020996.1-203ENST00000536896 2307 ntBASIC19.02■□□□□ 0.64
ZNF540Q8NDQ6 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.02■□□□□ 0.63
ZNF540Q8NDQ6 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.02■□□□□ 0.63
ZNF540Q8NDQ6 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
ZNF540Q8NDQ6 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.02■□□□□ 0.63
ZNF540Q8NDQ6 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
ZNF540Q8NDQ6 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF540Q8NDQ6 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 MIR5787-201ENST00000611784 55 ntBASIC19■□□□□ 0.63
ZNF540Q8NDQ6 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF540Q8NDQ6 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 AC136469.2-201ENST00000623944 1028 ntBASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF540Q8NDQ6 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms