Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VRK3Q8IV63 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VRK3Q8IV63 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VRK3Q8IV63 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VRK3Q8IV63 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VRK3Q8IV63 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VRK3Q8IV63 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VRK3Q8IV63 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VRK3Q8IV63 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VRK3Q8IV63 AC231657.2-201ENST00000624556 255 ntBASIC20.19■□□□□ 0.82
VRK3Q8IV63 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VRK3Q8IV63 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VRK3Q8IV63 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VRK3Q8IV63 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VRK3Q8IV63 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VRK3Q8IV63 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VRK3Q8IV63 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
VRK3Q8IV63 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VRK3Q8IV63 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VRK3Q8IV63 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VRK3Q8IV63 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VRK3Q8IV63 AC007322.3-201ENST00000426526 701 ntBASIC20.18■□□□□ 0.82
VRK3Q8IV63 AC007322.1-201ENST00000426983 750 ntBASIC20.18■□□□□ 0.82
VRK3Q8IV63 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.18■□□□□ 0.82
VRK3Q8IV63 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VRK3Q8IV63 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.18■□□□□ 0.82
VRK3Q8IV63 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
VRK3Q8IV63 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VRK3Q8IV63 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.18■□□□□ 0.82
VRK3Q8IV63 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VRK3Q8IV63 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VRK3Q8IV63 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.18■□□□□ 0.82
VRK3Q8IV63 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.18■□□□□ 0.82
VRK3Q8IV63 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.18■□□□□ 0.82
VRK3Q8IV63 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
VRK3Q8IV63 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.17■□□□□ 0.82
VRK3Q8IV63 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.17■□□□□ 0.82
VRK3Q8IV63 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.17■□□□□ 0.82
VRK3Q8IV63 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.17■□□□□ 0.82
VRK3Q8IV63 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.17■□□□□ 0.82
VRK3Q8IV63 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.17■□□□□ 0.82
VRK3Q8IV63 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.17■□□□□ 0.82
VRK3Q8IV63 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.17■□□□□ 0.82
VRK3Q8IV63 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
VRK3Q8IV63 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VRK3Q8IV63 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VRK3Q8IV63 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VRK3Q8IV63 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VRK3Q8IV63 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VRK3Q8IV63 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VRK3Q8IV63 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VRK3Q8IV63 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VRK3Q8IV63 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VRK3Q8IV63 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VRK3Q8IV63 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
VRK3Q8IV63 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
VRK3Q8IV63 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VRK3Q8IV63 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VRK3Q8IV63 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
VRK3Q8IV63 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VRK3Q8IV63 CYP2T1P-201ENST00000432607 1285 ntBASIC20.15■□□□□ 0.82
VRK3Q8IV63 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.15■□□□□ 0.82
VRK3Q8IV63 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.15■□□□□ 0.82
VRK3Q8IV63 CDV3P1-201ENST00000471403 739 ntBASIC20.15■□□□□ 0.82
VRK3Q8IV63 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VRK3Q8IV63 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.15■□□□□ 0.82
VRK3Q8IV63 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.15■□□□□ 0.82
VRK3Q8IV63 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
VRK3Q8IV63 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VRK3Q8IV63 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VRK3Q8IV63 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VRK3Q8IV63 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms