Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC8.5□□□□□ -1.054e-7■■□□□ 13.9
U2AF1Q01081 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC8.14□□□□□ -1.114e-7■■□□□ 13.9
U2AF1Q01081 CNOT1-211ENST00000567188 7830 ntTSL 1 (best)7.45□□□□□ -1.224e-7■■□□□ 13.9
U2AF1Q01081 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.564e-7■■□□□ 13.9
U2AF1Q01081 EHBP1-216ENST00000471179 588 ntTSL 222.89■■□□□ 1.254e-6■■□□□ 13.9
U2AF1Q01081 EHBP1-220ENST00000496857 1262 ntTSL 1 (best)14.73□□□□□ -0.054e-6■■□□□ 13.9
U2AF1Q01081 FBXO31-208ENST00000636077 660 ntTSL 529.55■■■□□ 2.322e-12■■□□□ 13.9
U2AF1Q01081 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC26.85■■□□□ 1.892e-12■■□□□ 13.9
U2AF1Q01081 FBXO31-204ENST00000565593 2717 ntTSL 525.27■■□□□ 1.642e-12■■□□□ 13.9
U2AF1Q01081 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.482e-12■■□□□ 13.9
U2AF1Q01081 FBXO31-202ENST00000561664 305 ntTSL 518.88■□□□□ 0.612e-12■■□□□ 13.9
U2AF1Q01081 BTNL9-208ENST00000512570 885 ntTSL 520.8■□□□□ 0.921e-6■■□□□ 13.9
U2AF1Q01081 VPS13D-209ENST00000487188 3990 ntTSL 27.66□□□□□ -1.182e-10■■□□□ 13.9
U2AF1Q01081 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC22.92■■□□□ 1.266e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-211ENST00000619337 545 ntTSL 431.43■■■□□ 2.622e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-204ENST00000522282 445 ntTSL 327.65■■■□□ 2.022e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-206ENST00000612880 593 ntTSL 227.65■■■□□ 2.022e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-207ENST00000613853 563 ntTSL 426.59■■□□□ 1.852e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC25.46■■□□□ 1.672e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC25.02■■□□□ 1.62e-9■■□□□ 13.9
U2AF1Q01081 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.562e-9■■□□□ 13.9
U2AF1Q01081 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC22.04■■□□□ 1.122e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.052e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-203ENST00000519428 676 ntTSL 221.06■□□□□ 0.962e-9■■□□□ 13.9
U2AF1Q01081 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.792e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.84■□□□□ 0.612e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC18.64■□□□□ 0.572e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.462e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-208ENST00000615676 5092 ntTSL 1 (best)17.23■□□□□ 0.352e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC17.21■□□□□ 0.352e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC16.94■□□□□ 0.32e-9■■□□□ 13.9
U2AF1Q01081 MTA2-203ENST00000526844 627 ntTSL 312.21□□□□□ -0.452e-9■■□□□ 13.9
U2AF1Q01081 YTHDF3-210ENST00000617952 420 ntTSL 310.66□□□□□ -0.72e-9■■□□□ 13.9
U2AF1Q01081 FAR1-205ENST00000532701 1109 ntTSL 221.54■■□□□ 1.043e-7■■□□□ 13.9
U2AF1Q01081 FAR1-201ENST00000354817 5264 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.233e-7■■□□□ 13.9
U2AF1Q01081 FAR1-202ENST00000524933 818 ntTSL 25.54□□□□□ -1.523e-7■■□□□ 13.9
U2AF1Q01081 AUP1-205ENST00000464887 845 ntTSL 218.66■□□□□ 0.588e-9■■□□□ 13.9
U2AF1Q01081 MALAT1-202ENST00000534336 8708 ntBASIC10.97□□□□□ -0.651e-323■■□□□ 13.9
U2AF1Q01081 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■□□□ 1.993e-16■■□□□ 13.9
U2AF1Q01081 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.63e-16■■□□□ 13.9
U2AF1Q01081 YBX3-207ENST00000539204 649 ntTSL 315.98■□□□□ 0.153e-16■■□□□ 13.9
U2AF1Q01081 YBX3-217ENST00000546164 805 ntTSL 215.88■□□□□ 0.133e-16■■□□□ 13.9
U2AF1Q01081 YBX3-213ENST00000542641 669 ntTSL 415.48■□□□□ 0.073e-16■■□□□ 13.9
U2AF1Q01081 YBX3-212ENST00000542002 952 ntTSL 213.06□□□□□ -0.323e-16■■□□□ 13.9
U2AF1Q01081 YBX3-215ENST00000544504 583 ntTSL 312.6□□□□□ -0.393e-16■■□□□ 13.9
U2AF1Q01081 YBX3-211ENST00000541351 717 ntTSL 412.41□□□□□ -0.423e-16■■□□□ 13.9
U2AF1Q01081 YBX3-208ENST00000540447 6393 ntTSL 210.47□□□□□ -0.733e-16■■□□□ 13.9
U2AF1Q01081 NLGN2-203ENST00000572893 305 ntTSL 333.04■■■□□ 2.883e-7■■□□□ 13.8
U2AF1Q01081 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.293e-7■■□□□ 13.8
U2AF1Q01081 SRSF2-206ENST00000582449 1518 ntTSL 224.78■■□□□ 1.563e-9■■□□□ 13.8
U2AF1Q01081 SRSF2-210ENST00000589919 595 ntTSL 28.41□□□□□ -1.063e-9■■□□□ 13.8
U2AF1Q01081 SLC17A9-203ENST00000411611 565 ntTSL 218.87■□□□□ 0.612e-11■■□□□ 13.8
U2AF1Q01081 HSPA8-219ENST00000532780 1194 ntTSL 223.91■■□□□ 1.427e-30■■□□□ 13.8
U2AF1Q01081 PABPN1-208ENST00000557702 778 ntTSL 2 BASIC12.41□□□□□ -0.425e-12■■□□□ 13.8
U2AF1Q01081 HSPA8-212ENST00000528292 1112 ntTSL 28.13□□□□□ -1.117e-30■■□□□ 13.8
U2AF1Q01081 HSPA8-216ENST00000532167 570 ntTSL 46.63□□□□□ -1.357e-30■■□□□ 13.8
U2AF1Q01081 PABPN1-204ENST00000554062 589 ntTSL 36.21□□□□□ -1.425e-12■■□□□ 13.8
U2AF1Q01081 HSPA8-205ENST00000525463 583 ntTSL 54.93□□□□□ -1.627e-30■■□□□ 13.8
U2AF1Q01081 NKD1-202ENST00000564336 477 ntTSL 330.26■■■□□ 2.432e-16■■□□□ 13.8
U2AF1Q01081 MLX-209ENST00000591024 796 ntTSL 325.68■■□□□ 1.76e-8■■□□□ 13.8
U2AF1Q01081 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.456e-8■■□□□ 13.8
U2AF1Q01081 MLX-206ENST00000588320 2313 ntTSL 519.86■□□□□ 0.776e-8■■□□□ 13.8
U2AF1Q01081 HACD2-202ENST00000469317 590 ntTSL 319.73■□□□□ 0.756e-8■■□□□ 13.8
U2AF1Q01081 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.66e-8■■□□□ 13.8
U2AF1Q01081 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.466e-8■■□□□ 13.8
U2AF1Q01081 MLX-207ENST00000590050 2537 ntTSL 217.76■□□□□ 0.436e-8■■□□□ 13.8
U2AF1Q01081 MLX-203ENST00000435881 2428 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.396e-8■■□□□ 13.8
U2AF1Q01081 MLX-205ENST00000586393 851 ntTSL 516.77■□□□□ 0.286e-8■■□□□ 13.8
U2AF1Q01081 HACD2-204ENST00000480081 574 ntTSL 415.73■□□□□ 0.116e-8■■□□□ 13.8
U2AF1Q01081 MLX-204ENST00000585403 1068 ntTSL 1 (best)14.65□□□□□ -0.066e-8■■□□□ 13.8
U2AF1Q01081 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.482e-16■■□□□ 13.8
U2AF1Q01081 CPSF6-205ENST00000550075 540 ntTSL 434.69■■■■□ 3.144e-7■■□□□ 13.8
U2AF1Q01081 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.34e-7■■□□□ 13.8
U2AF1Q01081 CPSF6-206ENST00000550987 560 ntTSL 46.85□□□□□ -1.314e-7■■□□□ 13.8
U2AF1Q01081 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.62□□□□□ -1.354e-7■■□□□ 13.8
U2AF1Q01081 PHTF2-212ENST00000479515 2467 ntTSL 56.2□□□□□ -1.424e-7■■□□□ 13.8
U2AF1Q01081 NSUN5P1-205ENST00000455158 806 ntTSL 327.52■■■□□ 21e-7■■□□□ 13.7
U2AF1Q01081 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.631e-7■■□□□ 13.7
U2AF1Q01081 NSUN5P1-202ENST00000421140 1535 ntBASIC23.95■■□□□ 1.431e-7■■□□□ 13.7
U2AF1Q01081 NSUN5P1-201ENST00000393633 4792 ntTSL 222.45■■□□□ 1.181e-7■■□□□ 13.7
U2AF1Q01081 ZNF655-221ENST00000489320 671 ntTSL 221.98■■□□□ 1.111e-7■■□□□ 13.7
U2AF1Q01081 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC20.59■□□□□ 0.891e-7■■□□□ 13.7
U2AF1Q01081 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC20.44■□□□□ 0.861e-7■■□□□ 13.7
U2AF1Q01081 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC18.37■□□□□ 0.531e-7■■□□□ 13.7
U2AF1Q01081 ABCC3-213ENST00000513589 582 ntTSL 417.34■□□□□ 0.371e-7■■□□□ 13.7
U2AF1Q01081 SET-205ENST00000409104 962 ntTSL 5 BASIC12.16□□□□□ -0.461e-7■■□□□ 13.7
U2AF1Q01081 SET-204ENST00000372692 2850 ntTSL 1 (best) BASIC12.05□□□□□ -0.481e-7■■□□□ 13.7
U2AF1Q01081 MCM7-204ENST00000425308 1497 ntTSL 337.63■■■■□ 3.613e-11■■□□□ 13.7
U2AF1Q01081 MCM7-209ENST00000485286 2900 ntTSL 221.62■■□□□ 1.053e-11■■□□□ 13.7
U2AF1Q01081 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC21.04■□□□□ 0.963e-11■■□□□ 13.7
U2AF1Q01081 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC20.05■□□□□ 0.83e-11■■□□□ 13.7
U2AF1Q01081 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC16.12■□□□□ 0.173e-11■■□□□ 13.7
U2AF1Q01081 MCM7-205ENST00000463722 1327 ntTSL 515.94■□□□□ 0.143e-11■■□□□ 13.7
U2AF1Q01081 MCM7-201ENST00000303887 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.083e-11■■□□□ 13.7
U2AF1Q01081 MCM7-208ENST00000467516 776 ntTSL 214.95□□□□□ -0.023e-11■■□□□ 13.7
U2AF1Q01081 MCM7-210ENST00000489841 2515 ntTSL 1 (best)12.77□□□□□ -0.373e-11■■□□□ 13.7
U2AF1Q01081 MCM7-211ENST00000491245 648 ntTSL 1 (best)12.28□□□□□ -0.443e-11■■□□□ 13.7
U2AF1Q01081 ABHD5-202ENST00000413300 525 ntTSL 37.41□□□□□ -1.225e-13■■□□□ 13.7
U2AF1Q01081 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.223e-6■■□□□ 13.7
U2AF1Q01081 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.373e-6■■□□□ 13.7
Retrieved 100 of 10,096 protein–RNA pairs in 64.1 ms