Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC16.58■□□□□ 0.24
CX3CL1P78423 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CL1P78423 ANKRD20A6P-201ENST00000618763 204 ntBASIC16.58■□□□□ 0.24
CX3CL1P78423 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CL1P78423 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC16.58■□□□□ 0.24
CX3CL1P78423 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC16.58■□□□□ 0.24
CX3CL1P78423 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.58■□□□□ 0.24
CX3CL1P78423 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CL1P78423 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CL1P78423 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CL1P78423 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CL1P78423 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CX3CL1P78423 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC16.58■□□□□ 0.24
CX3CL1P78423 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CX3CL1P78423 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC16.57■□□□□ 0.24
CX3CL1P78423 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
CX3CL1P78423 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC16.57■□□□□ 0.24
CX3CL1P78423 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC16.57■□□□□ 0.24
CX3CL1P78423 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC16.57■□□□□ 0.24
CX3CL1P78423 KRT18P20-201ENST00000548986 1279 ntBASIC16.57■□□□□ 0.24
CX3CL1P78423 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
CX3CL1P78423 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CX3CL1P78423 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CX3CL1P78423 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC16.57■□□□□ 0.24
CX3CL1P78423 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CX3CL1P78423 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CL1P78423 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.57■□□□□ 0.24
CX3CL1P78423 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CL1P78423 AL049796.1-201ENST00000565336 1766 ntBASIC16.56■□□□□ 0.24
CX3CL1P78423 AL157384.1-201ENST00000445995 2473 ntBASIC16.56■□□□□ 0.24
CX3CL1P78423 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CL1P78423 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CL1P78423 KRT16P2-201ENST00000414673 1423 ntBASIC16.56■□□□□ 0.24
CX3CL1P78423 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CX3CL1P78423 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CL1P78423 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CL1P78423 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CX3CL1P78423 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC16.56■□□□□ 0.24
CX3CL1P78423 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CL1P78423 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC16.56■□□□□ 0.24
CX3CL1P78423 GXYLT1P2-201ENST00000433312 1230 ntBASIC16.56■□□□□ 0.24
CX3CL1P78423 SLC7A5P2-201ENST00000553010 536 ntBASIC16.56■□□□□ 0.24
CX3CL1P78423 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC16.56■□□□□ 0.24
CX3CL1P78423 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CX3CL1P78423 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.56■□□□□ 0.24
CX3CL1P78423 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CL1P78423 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CL1P78423 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.56■□□□□ 0.24
CX3CL1P78423 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CX3CL1P78423 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.56■□□□□ 0.24
CX3CL1P78423 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CX3CL1P78423 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 AL162430.1-201ENST00000480705 870 ntBASIC16.55■□□□□ 0.24
CX3CL1P78423 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC16.55■□□□□ 0.24
CX3CL1P78423 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC16.55■□□□□ 0.24
CX3CL1P78423 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CX3CL1P78423 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CX3CL1P78423 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CX3CL1P78423 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CX3CL1P78423 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.55■□□□□ 0.24
CX3CL1P78423 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CX3CL1P78423 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CX3CL1P78423 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CX3CL1P78423 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CX3CL1P78423 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.54■□□□□ 0.24
CX3CL1P78423 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CX3CL1P78423 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CX3CL1P78423 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CX3CL1P78423 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC16.54■□□□□ 0.24
CX3CL1P78423 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CX3CL1P78423 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CX3CL1P78423 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.54■□□□□ 0.24
CX3CL1P78423 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.54■□□□□ 0.24
CX3CL1P78423 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CX3CL1P78423 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CX3CL1P78423 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms