Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX1P28360 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.88■□□□□ 0.61
MSX1P28360 AC091799.1-201ENST00000422823 811 ntBASIC18.88■□□□□ 0.61
MSX1P28360 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.88■□□□□ 0.61
MSX1P28360 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
MSX1P28360 AL591742.1-201ENST00000604433 565 ntBASIC18.88■□□□□ 0.61
MSX1P28360 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.88■□□□□ 0.61
MSX1P28360 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
MSX1P28360 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX1P28360 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX1P28360 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.87■□□□□ 0.61
MSX1P28360 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX1P28360 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX1P28360 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX1P28360 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.87■□□□□ 0.61
MSX1P28360 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
MSX1P28360 CDV3P1-201ENST00000471403 739 ntBASIC18.87■□□□□ 0.61
MSX1P28360 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX1P28360 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSX1P28360 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
MSX1P28360 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.87■□□□□ 0.61
MSX1P28360 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
MSX1P28360 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.87■□□□□ 0.61
MSX1P28360 AC066615.1-201ENST00000640911 628 ntBASIC18.87■□□□□ 0.61
MSX1P28360 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX1P28360 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.87■□□□□ 0.61
MSX1P28360 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSX1P28360 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
MSX1P28360 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSX1P28360 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
MSX1P28360 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSX1P28360 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
MSX1P28360 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSX1P28360 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSX1P28360 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSX1P28360 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.86■□□□□ 0.61
MSX1P28360 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
MSX1P28360 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
MSX1P28360 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
MSX1P28360 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.86■□□□□ 0.61
MSX1P28360 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
MSX1P28360 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSX1P28360 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSX1P28360 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.86■□□□□ 0.61
MSX1P28360 AC116050.2-201ENST00000612102 1779 ntBASIC18.86■□□□□ 0.61
MSX1P28360 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSX1P28360 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
MSX1P28360 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX1P28360 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX1P28360 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MSX1P28360 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
MSX1P28360 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX1P28360 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.85■□□□□ 0.61
MSX1P28360 AC069152.1-201ENST00000438030 544 ntBASIC18.85■□□□□ 0.61
MSX1P28360 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MSX1P28360 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.85■□□□□ 0.61
MSX1P28360 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX1P28360 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX1P28360 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX1P28360 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.84■□□□□ 0.61
MSX1P28360 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX1P28360 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.84■□□□□ 0.61
MSX1P28360 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.84■□□□□ 0.61
MSX1P28360 AF201337.1-201ENST00000520239 748 ntBASIC18.84■□□□□ 0.61
MSX1P28360 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.84■□□□□ 0.61
MSX1P28360 AC133041.1-202ENST00000642053 222 ntBASIC18.84■□□□□ 0.61
MSX1P28360 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
MSX1P28360 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.84■□□□□ 0.61
MSX1P28360 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
MSX1P28360 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX1P28360 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSX1P28360 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX1P28360 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX1P28360 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX1P28360 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MSX1P28360 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
MSX1P28360 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
MSX1P28360 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.83■□□□□ 0.61
MSX1P28360 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
MSX1P28360 AC011484.1-201ENST00000377652 1995 ntBASIC18.83■□□□□ 0.61
MSX1P28360 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
MSX1P28360 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MSX1P28360 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSX1P28360 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
MSX1P28360 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
MSX1P28360 AC073210.2-201ENST00000430369 194 ntBASIC18.83■□□□□ 0.6
MSX1P28360 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.83■□□□□ 0.6
MSX1P28360 CNN2P6-201ENST00000439038 900 ntBASIC18.83■□□□□ 0.6
MSX1P28360 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.83■□□□□ 0.6
MSX1P28360 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.83■□□□□ 0.6
MSX1P28360 AC133552.2-202ENST00000575694 574 ntBASIC18.83■□□□□ 0.6
MSX1P28360 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MSX1P28360 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MSX1P28360 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSX1P28360 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
MSX1P28360 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSX1P28360 AC121338.2-201ENST00000622535 1744 ntBASIC18.83■□□□□ 0.6
MSX1P28360 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSX1P28360 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.82■□□□□ 0.6
MSX1P28360 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms