Protein–RNA interactions for Protein: O95292

VAPB, Vesicle-associated membrane protein-associated protein B/C, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPBO95292 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VAPBO95292 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VAPBO95292 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VAPBO95292 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VAPBO95292 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VAPBO95292 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VAPBO95292 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.7■□□□□ 0.91
VAPBO95292 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
VAPBO95292 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VAPBO95292 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VAPBO95292 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VAPBO95292 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VAPBO95292 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
VAPBO95292 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.7■□□□□ 0.9
VAPBO95292 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.7■□□□□ 0.9
VAPBO95292 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.7■□□□□ 0.9
VAPBO95292 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.7■□□□□ 0.9
VAPBO95292 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
VAPBO95292 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VAPBO95292 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VAPBO95292 FP700111.2-201ENST00000619190 1892 ntBASIC20.7■□□□□ 0.9
VAPBO95292 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VAPBO95292 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
VAPBO95292 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VAPBO95292 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
VAPBO95292 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
VAPBO95292 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.7■□□□□ 0.9
VAPBO95292 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VAPBO95292 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAPBO95292 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VAPBO95292 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAPBO95292 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAPBO95292 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.69■□□□□ 0.9
VAPBO95292 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VAPBO95292 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAPBO95292 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAPBO95292 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAPBO95292 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
VAPBO95292 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.69■□□□□ 0.9
VAPBO95292 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
VAPBO95292 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAPBO95292 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAPBO95292 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VAPBO95292 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.68■□□□□ 0.9
VAPBO95292 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VAPBO95292 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
VAPBO95292 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAPBO95292 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAPBO95292 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAPBO95292 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAPBO95292 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAPBO95292 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
VAPBO95292 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.68■□□□□ 0.9
VAPBO95292 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAPBO95292 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.68■□□□□ 0.9
VAPBO95292 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.68■□□□□ 0.9
VAPBO95292 KRT18P20-201ENST00000548986 1279 ntBASIC20.68■□□□□ 0.9
VAPBO95292 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAPBO95292 KRT18P61-201ENST00000585825 1298 ntBASIC20.68■□□□□ 0.9
VAPBO95292 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
VAPBO95292 AP005212.1-201ENST00000581547 1997 ntBASIC20.68■□□□□ 0.9
VAPBO95292 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.68■□□□□ 0.9
VAPBO95292 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VAPBO95292 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.67■□□□□ 0.9
VAPBO95292 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.67■□□□□ 0.9
VAPBO95292 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VAPBO95292 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.67■□□□□ 0.9
VAPBO95292 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.67■□□□□ 0.9
VAPBO95292 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VAPBO95292 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.67■□□□□ 0.9
VAPBO95292 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
VAPBO95292 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VAPBO95292 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAPBO95292 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VAPBO95292 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VAPBO95292 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VAPBO95292 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VAPBO95292 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.66■□□□□ 0.9
VAPBO95292 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VAPBO95292 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.66■□□□□ 0.9
VAPBO95292 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
VAPBO95292 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.66■□□□□ 0.9
VAPBO95292 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.66■□□□□ 0.9
VAPBO95292 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.66■□□□□ 0.9
VAPBO95292 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VAPBO95292 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VAPBO95292 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
VAPBO95292 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VAPBO95292 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms