Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM13O60858 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM13O60858 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TRIM13O60858 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.29■□□□□ 0.84
TRIM13O60858 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM13O60858 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM13O60858 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.29■□□□□ 0.84
TRIM13O60858 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.29■□□□□ 0.84
TRIM13O60858 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
TRIM13O60858 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
TRIM13O60858 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM13O60858 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM13O60858 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM13O60858 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM13O60858 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
TRIM13O60858 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.28■□□□□ 0.84
TRIM13O60858 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM13O60858 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.28■□□□□ 0.84
TRIM13O60858 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
TRIM13O60858 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.28■□□□□ 0.84
TRIM13O60858 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM13O60858 AC112907.3-201ENST00000577781 2400 ntBASIC20.28■□□□□ 0.84
TRIM13O60858 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.28■□□□□ 0.84
TRIM13O60858 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.27■□□□□ 0.84
TRIM13O60858 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
TRIM13O60858 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM13O60858 AC007952.6-201ENST00000573168 2673 ntBASIC20.27■□□□□ 0.84
TRIM13O60858 AC003957.1-201ENST00000625108 2673 ntBASIC20.27■□□□□ 0.84
TRIM13O60858 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM13O60858 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM13O60858 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TRIM13O60858 AC061975.6-201ENST00000579045 1553 ntBASIC20.27■□□□□ 0.84
TRIM13O60858 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM13O60858 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.27■□□□□ 0.84
TRIM13O60858 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM13O60858 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM13O60858 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.27■□□□□ 0.84
TRIM13O60858 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TRIM13O60858 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.27■□□□□ 0.84
TRIM13O60858 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.27■□□□□ 0.84
TRIM13O60858 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.27■□□□□ 0.84
TRIM13O60858 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM13O60858 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM13O60858 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.27■□□□□ 0.84
TRIM13O60858 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM13O60858 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRIM13O60858 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
TRIM13O60858 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM13O60858 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
TRIM13O60858 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM13O60858 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM13O60858 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM13O60858 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM13O60858 AC099778.1-201ENST00000568593 1911 ntBASIC20.26■□□□□ 0.83
TRIM13O60858 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM13O60858 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
TRIM13O60858 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM13O60858 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TRIM13O60858 MIR572-201ENST00000384983 95 ntBASIC20.26■□□□□ 0.83
TRIM13O60858 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM13O60858 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM13O60858 AC027682.1-201ENST00000562846 899 ntBASIC20.26■□□□□ 0.83
TRIM13O60858 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM13O60858 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM13O60858 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM13O60858 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM13O60858 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM13O60858 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
TRIM13O60858 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TRIM13O60858 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM13O60858 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM13O60858 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM13O60858 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
TRIM13O60858 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TRIM13O60858 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM13O60858 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM13O60858 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM13O60858 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM13O60858 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
TRIM13O60858 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM13O60858 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM13O60858 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM13O60858 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM13O60858 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM13O60858 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM13O60858 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM13O60858 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.24■□□□□ 0.83
TRIM13O60858 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM13O60858 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms