Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SNX3O60493 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SNX3O60493 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SNX3O60493 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SNX3O60493 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.32■□□□□ 0.84
SNX3O60493 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SNX3O60493 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SNX3O60493 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SNX3O60493 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.32■□□□□ 0.84
SNX3O60493 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SNX3O60493 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SNX3O60493 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SNX3O60493 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SNX3O60493 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SNX3O60493 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.32■□□□□ 0.84
SNX3O60493 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.31■□□□□ 0.84
SNX3O60493 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SNX3O60493 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SNX3O60493 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SNX3O60493 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.31■□□□□ 0.84
SNX3O60493 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SNX3O60493 AC006455.2-201ENST00000429931 906 ntBASIC20.31■□□□□ 0.84
SNX3O60493 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.31■□□□□ 0.84
SNX3O60493 NTF6A-201ENST00000591175 560 ntBASIC20.31■□□□□ 0.84
SNX3O60493 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.31■□□□□ 0.84
SNX3O60493 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SNX3O60493 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SNX3O60493 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SNX3O60493 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.31■□□□□ 0.84
SNX3O60493 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SNX3O60493 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SNX3O60493 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SNX3O60493 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
SNX3O60493 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.3■□□□□ 0.84
SNX3O60493 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.3■□□□□ 0.84
SNX3O60493 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 AC092028.1-203ENST00000608262 953 ntBASIC20.3■□□□□ 0.84
SNX3O60493 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.3■□□□□ 0.84
SNX3O60493 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SNX3O60493 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SNX3O60493 AC092720.2-201ENST00000602388 1665 ntBASIC20.29■□□□□ 0.84
SNX3O60493 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 AC026471.1-201ENST00000564629 3026 ntBASIC20.29■□□□□ 0.84
SNX3O60493 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.29■□□□□ 0.84
SNX3O60493 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.29■□□□□ 0.84
SNX3O60493 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.29■□□□□ 0.84
SNX3O60493 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.29■□□□□ 0.84
SNX3O60493 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.29■□□□□ 0.84
SNX3O60493 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX3O60493 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.28■□□□□ 0.84
SNX3O60493 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SNX3O60493 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.28■□□□□ 0.84
SNX3O60493 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
SNX3O60493 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.28■□□□□ 0.84
SNX3O60493 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.28■□□□□ 0.84
SNX3O60493 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX3O60493 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SNX3O60493 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SNX3O60493 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.27■□□□□ 0.84
SNX3O60493 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX3O60493 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms