Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A5A8TX70 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A5A8TX70 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A5A8TX70 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A5A8TX70 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A5A8TX70 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A5A8TX70 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A5A8TX70 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A5A8TX70 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A5A8TX70 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 FAM8A6P-201ENST00000407496 1135 ntBASIC16.24■□□□□ 0.19
COL6A5A8TX70 HCG4P8-203ENST00000443049 980 ntBASIC16.24■□□□□ 0.19
COL6A5A8TX70 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A5A8TX70 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A5A8TX70 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A5A8TX70 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A5A8TX70 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.24■□□□□ 0.19
COL6A5A8TX70 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
COL6A5A8TX70 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A5A8TX70 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
COL6A5A8TX70 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
COL6A5A8TX70 AC022616.7-201ENST00000525383 220 ntBASIC16.23■□□□□ 0.19
COL6A5A8TX70 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.23■□□□□ 0.19
COL6A5A8TX70 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A5A8TX70 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A5A8TX70 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A5A8TX70 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC16.23■□□□□ 0.19
COL6A5A8TX70 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A5A8TX70 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A5A8TX70 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.23■□□□□ 0.19
COL6A5A8TX70 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A5A8TX70 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.23■□□□□ 0.19
COL6A5A8TX70 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
COL6A5A8TX70 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A5A8TX70 AP003733.4-201ENST00000623785 1697 ntBASIC16.23■□□□□ 0.19
COL6A5A8TX70 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.23■□□□□ 0.19
COL6A5A8TX70 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A5A8TX70 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A5A8TX70 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A5A8TX70 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A5A8TX70 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC16.22■□□□□ 0.19
COL6A5A8TX70 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A5A8TX70 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
COL6A5A8TX70 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.22■□□□□ 0.19
COL6A5A8TX70 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.22■□□□□ 0.19
COL6A5A8TX70 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A5A8TX70 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A5A8TX70 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.22■□□□□ 0.19
COL6A5A8TX70 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A5A8TX70 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.22■□□□□ 0.19
COL6A5A8TX70 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.22■□□□□ 0.19
COL6A5A8TX70 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC16.22■□□□□ 0.19
COL6A5A8TX70 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.22■□□□□ 0.19
COL6A5A8TX70 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
COL6A5A8TX70 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC16.22■□□□□ 0.19
COL6A5A8TX70 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC16.21■□□□□ 0.19
COL6A5A8TX70 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.21■□□□□ 0.19
COL6A5A8TX70 LINC01238-205ENST00000567549 1107 ntBASIC16.21■□□□□ 0.19
COL6A5A8TX70 AL121749.1-202ENST00000609313 2153 ntBASIC16.21■□□□□ 0.19
COL6A5A8TX70 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A5A8TX70 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A5A8TX70 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A5A8TX70 CDV3P1-201ENST00000471403 739 ntBASIC16.21■□□□□ 0.19
COL6A5A8TX70 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.21■□□□□ 0.19
COL6A5A8TX70 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.21■□□□□ 0.19
COL6A5A8TX70 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.21■□□□□ 0.18
COL6A5A8TX70 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL6A5A8TX70 MIR1238-201ENST00000408483 83 ntBASIC16.2■□□□□ 0.18
COL6A5A8TX70 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.2■□□□□ 0.18
COL6A5A8TX70 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC16.2■□□□□ 0.18
COL6A5A8TX70 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A5A8TX70 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A5A8TX70 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A5A8TX70 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
COL6A5A8TX70 SAPCD2P1-201ENST00000395413 1184 ntBASIC16.2■□□□□ 0.18
COL6A5A8TX70 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.2■□□□□ 0.18
COL6A5A8TX70 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A5A8TX70 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC16.2■□□□□ 0.18
COL6A5A8TX70 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A5A8TX70 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A5A8TX70 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC16.2■□□□□ 0.18
COL6A5A8TX70 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A5A8TX70 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
COL6A5A8TX70 ATP5G1P1-201ENST00000448724 379 ntBASIC16.19■□□□□ 0.18
COL6A5A8TX70 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A5A8TX70 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A5A8TX70 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.19■□□□□ 0.18
COL6A5A8TX70 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.19■□□□□ 0.18
COL6A5A8TX70 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A5A8TX70 KRT8P10-201ENST00000450021 1447 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms