Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 FP700111.2-201ENST00000619190 1892 ntBASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CPSF4LA6NMK7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19■□□□□ 0.63
CPSF4LA6NMK7 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19■□□□□ 0.63
CPSF4LA6NMK7 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19■□□□□ 0.63
CPSF4LA6NMK7 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19■□□□□ 0.63
CPSF4LA6NMK7 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19■□□□□ 0.63
CPSF4LA6NMK7 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 KRT87P-202ENST00000534226 1464 ntBASIC19■□□□□ 0.63
CPSF4LA6NMK7 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CPSF4LA6NMK7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CPSF4LA6NMK7 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CPSF4LA6NMK7 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19■□□□□ 0.63
CPSF4LA6NMK7 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
CPSF4LA6NMK7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19■□□□□ 0.63
CPSF4LA6NMK7 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 IRS3P-201ENST00000223076 1006 ntBASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 AC005837.3-201ENST00000612163 286 ntBASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 AC008175.2-201ENST00000612840 297 ntBASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.99■□□□□ 0.63
CPSF4LA6NMK7 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CPSF4LA6NMK7 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 AL391422.3-201ENST00000603791 2761 ntBASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
CPSF4LA6NMK7 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 AC011484.1-201ENST00000377652 1995 ntBASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 POU5F1P4-201ENST00000413175 1085 ntBASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.96■□□□□ 0.63
CPSF4LA6NMK7 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.95■□□□□ 0.62
CPSF4LA6NMK7 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CPSF4LA6NMK7 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CPSF4LA6NMK7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CPSF4LA6NMK7 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.95■□□□□ 0.62
CPSF4LA6NMK7 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms