Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
NKX3-1Q99801 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.98■□□□□ 0.47
NKX3-1Q99801 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
NKX3-1Q99801 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
NKX3-1Q99801 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
NKX3-1Q99801 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
NKX3-1Q99801 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
NKX3-1Q99801 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.98■□□□□ 0.47
NKX3-1Q99801 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
NKX3-1Q99801 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
NKX3-1Q99801 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC17.98■□□□□ 0.47
NKX3-1Q99801 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
NKX3-1Q99801 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
NKX3-1Q99801 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
NKX3-1Q99801 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
NKX3-1Q99801 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
NKX3-1Q99801 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
NKX3-1Q99801 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
NKX3-1Q99801 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
NKX3-1Q99801 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
NKX3-1Q99801 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
NKX3-1Q99801 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC17.97■□□□□ 0.47
NKX3-1Q99801 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
NKX3-1Q99801 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.97■□□□□ 0.47
NKX3-1Q99801 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
NKX3-1Q99801 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
NKX3-1Q99801 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
NKX3-1Q99801 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
NKX3-1Q99801 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
NKX3-1Q99801 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
NKX3-1Q99801 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.96■□□□□ 0.47
NKX3-1Q99801 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
NKX3-1Q99801 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
NKX3-1Q99801 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
NKX3-1Q99801 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.96■□□□□ 0.47
NKX3-1Q99801 AC008764.7-201ENST00000593779 1081 ntBASIC17.96■□□□□ 0.47
NKX3-1Q99801 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
NKX3-1Q99801 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.96■□□□□ 0.47
NKX3-1Q99801 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.96■□□□□ 0.47
NKX3-1Q99801 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
NKX3-1Q99801 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
NKX3-1Q99801 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
NKX3-1Q99801 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
NKX3-1Q99801 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
NKX3-1Q99801 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
NKX3-1Q99801 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.46
NKX3-1Q99801 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.95■□□□□ 0.46
NKX3-1Q99801 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.95■□□□□ 0.46
NKX3-1Q99801 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
NKX3-1Q99801 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.95■□□□□ 0.46
NKX3-1Q99801 AC055733.4-201ENST00000638462 1354 ntBASIC17.95■□□□□ 0.46
NKX3-1Q99801 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.95■□□□□ 0.46
NKX3-1Q99801 RNF165-205ENST00000588679 2904 ntBASIC17.95■□□□□ 0.46
NKX3-1Q99801 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC17.95■□□□□ 0.46
NKX3-1Q99801 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC17.95■□□□□ 0.46
NKX3-1Q99801 AC233992.3-201ENST00000607491 485 ntBASIC17.95■□□□□ 0.46
NKX3-1Q99801 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.95■□□□□ 0.46
NKX3-1Q99801 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.95■□□□□ 0.46
NKX3-1Q99801 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.95■□□□□ 0.46
NKX3-1Q99801 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 FP700111.2-201ENST00000619190 1892 ntBASIC17.95■□□□□ 0.46
NKX3-1Q99801 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX3-1Q99801 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
NKX3-1Q99801 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.94■□□□□ 0.46
NKX3-1Q99801 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
NKX3-1Q99801 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
NKX3-1Q99801 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
NKX3-1Q99801 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC17.94■□□□□ 0.46
NKX3-1Q99801 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 IGHV3-19-201ENST00000521488 291 ntBASIC17.94■□□□□ 0.46
NKX3-1Q99801 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 AL121603.2-201ENST00000557373 2117 ntBASIC17.94■□□□□ 0.46
NKX3-1Q99801 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.94■□□□□ 0.46
NKX3-1Q99801 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX3-1Q99801 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.94■□□□□ 0.46
NKX3-1Q99801 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.94■□□□□ 0.46
NKX3-1Q99801 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.93■□□□□ 0.46
NKX3-1Q99801 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms