Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
NEK1Q96PY6 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
NEK1Q96PY6 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
NEK1Q96PY6 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
NEK1Q96PY6 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC24.49■■□□□ 1.51
NEK1Q96PY6 ME2-216ENST00000639850 2331 ntTSL 5 BASIC24.49■■□□□ 1.51
NEK1Q96PY6 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
NEK1Q96PY6 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC24.49■■□□□ 1.51
NEK1Q96PY6 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC24.49■■□□□ 1.51
NEK1Q96PY6 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.49■■□□□ 1.51
NEK1Q96PY6 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC24.49■■□□□ 1.51
NEK1Q96PY6 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC24.49■■□□□ 1.51
NEK1Q96PY6 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
NEK1Q96PY6 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC24.49■■□□□ 1.51
NEK1Q96PY6 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
NEK1Q96PY6 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
NEK1Q96PY6 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
NEK1Q96PY6 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC24.49■■□□□ 1.51
NEK1Q96PY6 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
NEK1Q96PY6 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
NEK1Q96PY6 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
NEK1Q96PY6 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
NEK1Q96PY6 AC091799.1-201ENST00000422823 811 ntBASIC24.48■■□□□ 1.51
NEK1Q96PY6 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.48■■□□□ 1.51
NEK1Q96PY6 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC24.48■■□□□ 1.51
NEK1Q96PY6 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC24.48■■□□□ 1.51
NEK1Q96PY6 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC24.48■■□□□ 1.51
NEK1Q96PY6 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.48■■□□□ 1.51
NEK1Q96PY6 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
NEK1Q96PY6 AL157384.1-201ENST00000445995 2473 ntBASIC24.47■■□□□ 1.51
NEK1Q96PY6 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
NEK1Q96PY6 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
NEK1Q96PY6 PTPA-214ENST00000423100 988 ntTSL 2 BASIC24.47■■□□□ 1.51
NEK1Q96PY6 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.47■■□□□ 1.51
NEK1Q96PY6 AL162430.1-201ENST00000480705 870 ntBASIC24.47■■□□□ 1.51
NEK1Q96PY6 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
NEK1Q96PY6 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC24.47■■□□□ 1.51
NEK1Q96PY6 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.47■■□□□ 1.51
NEK1Q96PY6 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC24.47■■□□□ 1.51
NEK1Q96PY6 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
NEK1Q96PY6 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
NEK1Q96PY6 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
NEK1Q96PY6 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
NEK1Q96PY6 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
NEK1Q96PY6 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
NEK1Q96PY6 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
NEK1Q96PY6 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
NEK1Q96PY6 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
NEK1Q96PY6 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
NEK1Q96PY6 GLI3-203ENST00000437480 451 ntTSL 2 BASIC24.46■■□□□ 1.51
NEK1Q96PY6 AC137761.2-201ENST00000561729 223 ntBASIC24.46■■□□□ 1.51
NEK1Q96PY6 AC145350.3-201ENST00000569033 163 ntBASIC24.46■■□□□ 1.51
NEK1Q96PY6 AC116050.2-201ENST00000612102 1779 ntBASIC24.46■■□□□ 1.51
NEK1Q96PY6 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
NEK1Q96PY6 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
NEK1Q96PY6 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC24.46■■□□□ 1.51
NEK1Q96PY6 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
NEK1Q96PY6 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.51
NEK1Q96PY6 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
NEK1Q96PY6 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC24.45■■□□□ 1.5
NEK1Q96PY6 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC24.45■■□□□ 1.5
NEK1Q96PY6 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
NEK1Q96PY6 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
NEK1Q96PY6 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
NEK1Q96PY6 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
NEK1Q96PY6 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NEK1Q96PY6 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NEK1Q96PY6 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC24.45■■□□□ 1.5
NEK1Q96PY6 AC007225.1-201ENST00000566331 1836 ntBASIC24.45■■□□□ 1.5
NEK1Q96PY6 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
NEK1Q96PY6 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
NEK1Q96PY6 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24.44■■□□□ 1.5
NEK1Q96PY6 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
NEK1Q96PY6 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC24.44■■□□□ 1.5
NEK1Q96PY6 SPI1-203ENST00000533030 661 ntTSL 2 BASIC24.44■■□□□ 1.5
NEK1Q96PY6 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
NEK1Q96PY6 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC24.44■■□□□ 1.5
NEK1Q96PY6 FEM1AP1-201ENST00000431297 1995 ntBASIC24.43■■□□□ 1.5
NEK1Q96PY6 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NEK1Q96PY6 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NEK1Q96PY6 STAC-204ENST00000457375 1366 ntTSL 2 BASIC24.43■■□□□ 1.5
NEK1Q96PY6 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
NEK1Q96PY6 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC24.43■■□□□ 1.5
NEK1Q96PY6 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
NEK1Q96PY6 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
NEK1Q96PY6 KRT18P11-201ENST00000435214 1283 ntBASIC24.43■■□□□ 1.5
NEK1Q96PY6 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC24.43■■□□□ 1.5
NEK1Q96PY6 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC24.43■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms