Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA3Q8IX90 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA3Q8IX90 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SKA3Q8IX90 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SKA3Q8IX90 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA3Q8IX90 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SKA3Q8IX90 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 MYCNOS-205ENST00000641950 531 ntBASIC18.26■□□□□ 0.51
SKA3Q8IX90 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA3Q8IX90 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SKA3Q8IX90 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA3Q8IX90 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.26■□□□□ 0.51
SKA3Q8IX90 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA3Q8IX90 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.25■□□□□ 0.51
SKA3Q8IX90 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.25■□□□□ 0.51
SKA3Q8IX90 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA3Q8IX90 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.25■□□□□ 0.51
SKA3Q8IX90 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA3Q8IX90 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.25■□□□□ 0.51
SKA3Q8IX90 KRT18P11-201ENST00000435214 1283 ntBASIC18.25■□□□□ 0.51
SKA3Q8IX90 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.25■□□□□ 0.51
SKA3Q8IX90 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.25■□□□□ 0.51
SKA3Q8IX90 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA3Q8IX90 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA3Q8IX90 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.25■□□□□ 0.51
SKA3Q8IX90 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SKA3Q8IX90 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.24■□□□□ 0.51
SKA3Q8IX90 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SKA3Q8IX90 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
SKA3Q8IX90 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.24■□□□□ 0.51
SKA3Q8IX90 AC006015.1-201ENST00000429970 570 ntBASIC18.24■□□□□ 0.51
SKA3Q8IX90 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SKA3Q8IX90 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SKA3Q8IX90 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SKA3Q8IX90 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SKA3Q8IX90 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.24■□□□□ 0.51
SKA3Q8IX90 RARRES2P11-201ENST00000635158 484 ntBASIC18.24■□□□□ 0.51
SKA3Q8IX90 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SKA3Q8IX90 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SKA3Q8IX90 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SKA3Q8IX90 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SKA3Q8IX90 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SKA3Q8IX90 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SKA3Q8IX90 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SKA3Q8IX90 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SKA3Q8IX90 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SKA3Q8IX90 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SKA3Q8IX90 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.23■□□□□ 0.51
SKA3Q8IX90 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SKA3Q8IX90 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SKA3Q8IX90 AC245052.3-201ENST00000450182 901 ntBASIC18.22■□□□□ 0.51
SKA3Q8IX90 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 IKBKGP1-201ENST00000612193 1073 ntBASIC18.22■□□□□ 0.51
SKA3Q8IX90 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.22■□□□□ 0.51
SKA3Q8IX90 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.22■□□□□ 0.51
SKA3Q8IX90 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SKA3Q8IX90 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SKA3Q8IX90 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SKA3Q8IX90 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SKA3Q8IX90 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SKA3Q8IX90 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.21■□□□□ 0.51
SKA3Q8IX90 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SKA3Q8IX90 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SKA3Q8IX90 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.21■□□□□ 0.51
SKA3Q8IX90 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SKA3Q8IX90 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SKA3Q8IX90 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms