Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 AC011298.3-201ENST00000615796 283 ntBASIC18.41■□□□□ 0.54
CCDC58Q4VC31 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 SYT6-210ENST00000641643 1587 ntBASIC18.41■□□□□ 0.54
CCDC58Q4VC31 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC58Q4VC31 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 SERBP1P1-201ENST00000396021 1160 ntBASIC18.4■□□□□ 0.54
CCDC58Q4VC31 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 AL512631.2-201ENST00000604634 923 ntBASIC18.4■□□□□ 0.54
CCDC58Q4VC31 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC58Q4VC31 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC58Q4VC31 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 SLC47A1P1-202ENST00000449666 945 ntBASIC18.39■□□□□ 0.53
CCDC58Q4VC31 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC58Q4VC31 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 AC007225.1-201ENST00000566331 1836 ntBASIC18.38■□□□□ 0.53
CCDC58Q4VC31 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 SF1-220ENST00000626028 704 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC58Q4VC31 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 AC020907.5-201ENST00000624372 1936 ntBASIC18.37■□□□□ 0.53
CCDC58Q4VC31 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC58Q4VC31 AC027702.1-201ENST00000563810 1770 ntBASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms