Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC104771.1-201ENST00000603335 964 ntBASIC19.17■□□□□ 0.66
RNF4P78317 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.17■□□□□ 0.66
RNF4P78317 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RNF4P78317 FEM1AP4-201ENST00000443167 1987 ntBASIC19.17■□□□□ 0.66
RNF4P78317 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.17■□□□□ 0.66
RNF4P78317 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.17■□□□□ 0.66
RNF4P78317 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.17■□□□□ 0.66
RNF4P78317 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.16■□□□□ 0.66
RNF4P78317 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF4P78317 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF4P78317 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RNF4P78317 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF4P78317 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF4P78317 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF4P78317 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
RNF4P78317 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF4P78317 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF4P78317 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF4P78317 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF4P78317 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF4P78317 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF4P78317 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF4P78317 CLDN5-201ENST00000403084 2357 ntBASIC19.15■□□□□ 0.66
RNF4P78317 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF4P78317 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF4P78317 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF4P78317 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF4P78317 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF4P78317 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF4P78317 AL049796.1-201ENST00000565336 1766 ntBASIC19.15■□□□□ 0.66
RNF4P78317 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF4P78317 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF4P78317 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.15■□□□□ 0.66
RNF4P78317 AL512625.2-201ENST00000417533 625 ntBASIC19.15■□□□□ 0.66
RNF4P78317 TSPY6P-201ENST00000448518 926 ntBASIC19.15■□□□□ 0.66
RNF4P78317 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF4P78317 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF4P78317 AC026310.3-201ENST00000625186 2373 ntBASIC19.15■□□□□ 0.66
RNF4P78317 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF4P78317 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF4P78317 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF4P78317 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF4P78317 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
RNF4P78317 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RNF4P78317 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF4P78317 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
RNF4P78317 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
RNF4P78317 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
RNF4P78317 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF4P78317 AC093787.1-201ENST00000450396 207 ntBASIC19.14■□□□□ 0.65
RNF4P78317 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.14■□□□□ 0.65
RNF4P78317 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
RNF4P78317 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
RNF4P78317 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF4P78317 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
RNF4P78317 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
RNF4P78317 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RNF4P78317 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF4P78317 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF4P78317 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF4P78317 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
RNF4P78317 SLC29A4P1-201ENST00000398760 971 ntBASIC19.13■□□□□ 0.65
RNF4P78317 GUSBP6-202ENST00000438529 1198 ntBASIC19.13■□□□□ 0.65
RNF4P78317 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.13■□□□□ 0.65
RNF4P78317 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.13■□□□□ 0.65
RNF4P78317 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.13■□□□□ 0.65
RNF4P78317 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
RNF4P78317 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF4P78317 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF4P78317 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.13■□□□□ 0.65
RNF4P78317 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF4P78317 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF4P78317 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF4P78317 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF4P78317 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF4P78317 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
RNF4P78317 MKRN4P-201ENST00000444706 1521 ntBASIC19.12■□□□□ 0.65
RNF4P78317 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF4P78317 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
RNF4P78317 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF4P78317 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF4P78317 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
RNF4P78317 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
RNF4P78317 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.12■□□□□ 0.65
RNF4P78317 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF4P78317 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF4P78317 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF4P78317 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF4P78317 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF4P78317 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF4P78317 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF4P78317 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RNF4P78317 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF4P78317 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
RNF4P78317 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF4P78317 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF4P78317 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RNF4P78317 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RNF4P78317 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF4P78317 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms