Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN1P58418 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN1P58418 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN1P58418 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.44■□□□□ 0.54
CLRN1P58418 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.44■□□□□ 0.54
CLRN1P58418 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.44■□□□□ 0.54
CLRN1P58418 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN1P58418 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN1P58418 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN1P58418 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CLRN1P58418 AC006128.1-201ENST00000624704 1661 ntBASIC18.44■□□□□ 0.54
CLRN1P58418 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.43■□□□□ 0.54
CLRN1P58418 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.43■□□□□ 0.54
CLRN1P58418 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.43■□□□□ 0.54
CLRN1P58418 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.43■□□□□ 0.54
CLRN1P58418 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.43■□□□□ 0.54
CLRN1P58418 NTF6G-201ENST00000591094 616 ntBASIC18.43■□□□□ 0.54
CLRN1P58418 AC087623.3-201ENST00000607047 1098 ntBASIC18.43■□□□□ 0.54
CLRN1P58418 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.43■□□□□ 0.54
CLRN1P58418 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.43■□□□□ 0.54
CLRN1P58418 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.43■□□□□ 0.54
CLRN1P58418 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN1P58418 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.43■□□□□ 0.54
CLRN1P58418 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.42■□□□□ 0.54
CLRN1P58418 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN1P58418 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN1P58418 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN1P58418 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN1P58418 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.42■□□□□ 0.54
CLRN1P58418 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.42■□□□□ 0.54
CLRN1P58418 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.42■□□□□ 0.54
CLRN1P58418 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN1P58418 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN1P58418 PLK5-205ENST00000642079 1969 ntBASIC18.42■□□□□ 0.54
CLRN1P58418 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CLRN1P58418 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CLRN1P58418 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.42■□□□□ 0.54
CLRN1P58418 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CLRN1P58418 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CLRN1P58418 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.41■□□□□ 0.54
CLRN1P58418 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CLRN1P58418 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN1P58418 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.41■□□□□ 0.54
CLRN1P58418 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.41■□□□□ 0.54
CLRN1P58418 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CLRN1P58418 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN1P58418 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.41■□□□□ 0.54
CLRN1P58418 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.41■□□□□ 0.54
CLRN1P58418 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN1P58418 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CLRN1P58418 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN1P58418 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.41■□□□□ 0.54
CLRN1P58418 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.41■□□□□ 0.54
CLRN1P58418 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN1P58418 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN1P58418 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN1P58418 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.41■□□□□ 0.54
CLRN1P58418 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN1P58418 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN1P58418 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.41■□□□□ 0.54
CLRN1P58418 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN1P58418 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN1P58418 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.41■□□□□ 0.54
CLRN1P58418 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 AIRN-201ENST00000601203 4374 ntBASIC18.4■□□□□ 0.54
CLRN1P58418 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.4■□□□□ 0.54
CLRN1P58418 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.4■□□□□ 0.54
CLRN1P58418 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 RARRES2P11-201ENST00000635158 484 ntBASIC18.4■□□□□ 0.54
CLRN1P58418 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.4■□□□□ 0.54
CLRN1P58418 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN1P58418 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.54
CLRN1P58418 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLRN1P58418 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN1P58418 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN1P58418 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN1P58418 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN1P58418 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN1P58418 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms