Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH6P55285 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH6P55285 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.5■■□□□ 1.03
CDH6P55285 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDH6P55285 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDH6P55285 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDH6P55285 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH6P55285 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH6P55285 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDH6P55285 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDH6P55285 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.49■■□□□ 1.03
CDH6P55285 AC011484.1-201ENST00000377652 1995 ntBASIC21.49■■□□□ 1.03
CDH6P55285 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH6P55285 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
CDH6P55285 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.49■■□□□ 1.03
CDH6P55285 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.49■■□□□ 1.03
CDH6P55285 NTF6G-201ENST00000591094 616 ntBASIC21.49■■□□□ 1.03
CDH6P55285 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH6P55285 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.49■■□□□ 1.03
CDH6P55285 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDH6P55285 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH6P55285 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH6P55285 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
CDH6P55285 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CDH6P55285 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.48■■□□□ 1.03
CDH6P55285 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CDH6P55285 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.48■■□□□ 1.03
CDH6P55285 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.48■■□□□ 1.03
CDH6P55285 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH6P55285 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
CDH6P55285 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.47■■□□□ 1.03
CDH6P55285 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CDH6P55285 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.47■■□□□ 1.03
CDH6P55285 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
CDH6P55285 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CDH6P55285 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CDH6P55285 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.47■■□□□ 1.03
CDH6P55285 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH6P55285 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
CDH6P55285 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CDH6P55285 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDH6P55285 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
CDH6P55285 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CDH6P55285 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CDH6P55285 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CDH6P55285 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDH6P55285 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.46■■□□□ 1.03
CDH6P55285 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.46■■□□□ 1.03
CDH6P55285 MIR5787-201ENST00000611784 55 ntBASIC21.46■■□□□ 1.03
CDH6P55285 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDH6P55285 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CDH6P55285 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CDH6P55285 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.46■■□□□ 1.03
CDH6P55285 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDH6P55285 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CDH6P55285 FEM1AP1-201ENST00000431297 1995 ntBASIC21.45■■□□□ 1.02
CDH6P55285 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDH6P55285 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
CDH6P55285 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CDH6P55285 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CDH6P55285 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.45■■□□□ 1.02
CDH6P55285 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
CDH6P55285 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.45■■□□□ 1.02
CDH6P55285 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDH6P55285 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.45■■□□□ 1.02
CDH6P55285 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDH6P55285 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CDH6P55285 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CDH6P55285 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CDH6P55285 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDH6P55285 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms