Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SPTA1P02549 AC113347.1-201ENST00000413321 391 ntBASIC18.84■□□□□ 0.61
SPTA1P02549 KRT126P-201ENST00000549467 1181 ntBASIC18.84■□□□□ 0.61
SPTA1P02549 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SPTA1P02549 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SPTA1P02549 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SPTA1P02549 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SPTA1P02549 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SPTA1P02549 AC003102.1-202ENST00000563394 1796 ntBASIC18.83■□□□□ 0.61
SPTA1P02549 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
SPTA1P02549 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.83■□□□□ 0.61
SPTA1P02549 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SPTA1P02549 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SPTA1P02549 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.83■□□□□ 0.61
SPTA1P02549 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.83■□□□□ 0.61
SPTA1P02549 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
SPTA1P02549 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.83■□□□□ 0.6
SPTA1P02549 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SPTA1P02549 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SPTA1P02549 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SPTA1P02549 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
SPTA1P02549 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SPTA1P02549 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SPTA1P02549 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SPTA1P02549 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SPTA1P02549 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SPTA1P02549 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
SPTA1P02549 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.82■□□□□ 0.6
SPTA1P02549 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.82■□□□□ 0.6
SPTA1P02549 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
SPTA1P02549 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.82■□□□□ 0.6
SPTA1P02549 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.82■□□□□ 0.6
SPTA1P02549 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.82■□□□□ 0.6
SPTA1P02549 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC18.82■□□□□ 0.6
SPTA1P02549 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SPTA1P02549 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.82■□□□□ 0.6
SPTA1P02549 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
SPTA1P02549 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.82■□□□□ 0.6
SPTA1P02549 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
SPTA1P02549 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.82■□□□□ 0.6
SPTA1P02549 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.82■□□□□ 0.6
SPTA1P02549 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.82■□□□□ 0.6
SPTA1P02549 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SPTA1P02549 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SPTA1P02549 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SPTA1P02549 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.81■□□□□ 0.6
SPTA1P02549 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SPTA1P02549 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SPTA1P02549 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SPTA1P02549 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SPTA1P02549 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.81■□□□□ 0.6
SPTA1P02549 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.81■□□□□ 0.6
SPTA1P02549 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SPTA1P02549 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SPTA1P02549 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.81■□□□□ 0.6
SPTA1P02549 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SPTA1P02549 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SPTA1P02549 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SPTA1P02549 KRT18P57-201ENST00000443599 1254 ntBASIC18.81■□□□□ 0.6
SPTA1P02549 NTF6B-201ENST00000591913 560 ntBASIC18.81■□□□□ 0.6
SPTA1P02549 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SPTA1P02549 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SPTA1P02549 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SPTA1P02549 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SPTA1P02549 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.8■□□□□ 0.6
SPTA1P02549 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SPTA1P02549 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SPTA1P02549 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SPTA1P02549 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SPTA1P02549 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SPTA1P02549 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.8■□□□□ 0.6
SPTA1P02549 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.8■□□□□ 0.6
SPTA1P02549 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SPTA1P02549 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SPTA1P02549 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SPTA1P02549 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SPTA1P02549 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SPTA1P02549 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.8■□□□□ 0.6
SPTA1P02549 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SPTA1P02549 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SPTA1P02549 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SPTA1P02549 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.8■□□□□ 0.6
SPTA1P02549 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.8■□□□□ 0.6
SPTA1P02549 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.79■□□□□ 0.6
SPTA1P02549 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.79■□□□□ 0.6
SPTA1P02549 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SPTA1P02549 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SPTA1P02549 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SPTA1P02549 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.79■□□□□ 0.6
SPTA1P02549 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SPTA1P02549 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SPTA1P02549 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SPTA1P02549 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SPTA1P02549 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SPTA1P02549 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SPTA1P02549 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SPTA1P02549 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SPTA1P02549 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.79■□□□□ 0.6
SPTA1P02549 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SPTA1P02549 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms