Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDC3O75056 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.26■□□□□ 0.83
SDC3O75056 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDC3O75056 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SDC3O75056 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.25■□□□□ 0.83
SDC3O75056 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SDC3O75056 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SDC3O75056 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SDC3O75056 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SDC3O75056 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SDC3O75056 AL596275.1-201ENST00000423464 877 ntBASIC20.25■□□□□ 0.83
SDC3O75056 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SDC3O75056 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.25■□□□□ 0.83
SDC3O75056 PNMA6B-201ENST00000538162 1200 ntBASIC20.25■□□□□ 0.83
SDC3O75056 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.25■□□□□ 0.83
SDC3O75056 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.25■□□□□ 0.83
SDC3O75056 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.25■□□□□ 0.83
SDC3O75056 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.25■□□□□ 0.83
SDC3O75056 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SDC3O75056 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SDC3O75056 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SDC3O75056 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
SDC3O75056 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SDC3O75056 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SDC3O75056 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SDC3O75056 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SDC3O75056 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SDC3O75056 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.24■□□□□ 0.83
SDC3O75056 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
SDC3O75056 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.24■□□□□ 0.83
SDC3O75056 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.24■□□□□ 0.83
SDC3O75056 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SDC3O75056 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SDC3O75056 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SDC3O75056 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SDC3O75056 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SDC3O75056 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SDC3O75056 CYP21A1P-202ENST00000354927 1481 ntBASIC20.24■□□□□ 0.83
SDC3O75056 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SDC3O75056 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.23■□□□□ 0.83
SDC3O75056 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.23■□□□□ 0.83
SDC3O75056 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SDC3O75056 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SDC3O75056 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SDC3O75056 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.23■□□□□ 0.83
SDC3O75056 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.23■□□□□ 0.83
SDC3O75056 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.23■□□□□ 0.83
SDC3O75056 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDC3O75056 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SDC3O75056 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SDC3O75056 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.22■□□□□ 0.83
SDC3O75056 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SDC3O75056 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.22■□□□□ 0.83
SDC3O75056 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SDC3O75056 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.22■□□□□ 0.83
SDC3O75056 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.22■□□□□ 0.83
SDC3O75056 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SDC3O75056 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.22■□□□□ 0.83
SDC3O75056 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SDC3O75056 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
SDC3O75056 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SDC3O75056 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.22■□□□□ 0.83
SDC3O75056 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SDC3O75056 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SDC3O75056 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.21■□□□□ 0.83
SDC3O75056 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
SDC3O75056 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SDC3O75056 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.21■□□□□ 0.83
SDC3O75056 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.21■□□□□ 0.83
SDC3O75056 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SDC3O75056 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SDC3O75056 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
SDC3O75056 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SDC3O75056 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SDC3O75056 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.21■□□□□ 0.83
SDC3O75056 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.21■□□□□ 0.83
SDC3O75056 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
SDC3O75056 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.21■□□□□ 0.83
SDC3O75056 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.21■□□□□ 0.83
SDC3O75056 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.21■□□□□ 0.83
SDC3O75056 AL359736.2-201ENST00000621992 437 ntBASIC20.21■□□□□ 0.83
SDC3O75056 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.21■□□□□ 0.83
SDC3O75056 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.21■□□□□ 0.83
SDC3O75056 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SDC3O75056 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.21■□□□□ 0.83
SDC3O75056 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms