Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.53
DDX4Q9NQI0 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC24.64■■□□□ 1.53
DDX4Q9NQI0 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
DDX4Q9NQI0 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
DDX4Q9NQI0 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC24.63■■□□□ 1.53
DDX4Q9NQI0 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
DDX4Q9NQI0 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 ECEL1P1-201ENST00000373592 1742 ntBASIC24.62■■□□□ 1.53
DDX4Q9NQI0 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 AC073648.6-201ENST00000641589 218 ntBASIC24.62■■□□□ 1.53
DDX4Q9NQI0 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 LSR-203ENST00000360798 1963 ntTSL 2 BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
DDX4Q9NQI0 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 AC060766.5-201ENST00000590539 871 ntBASIC24.61■■□□□ 1.53
DDX4Q9NQI0 MMD2-204ENST00000612910 778 ntTSL 5 BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 HLA-B-256ENST00000639848 1089 ntBASIC24.61■■□□□ 1.53
DDX4Q9NQI0 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC24.61■■□□□ 1.53
DDX4Q9NQI0 AC116050.2-201ENST00000612102 1779 ntBASIC24.6■■□□□ 1.53
DDX4Q9NQI0 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
DDX4Q9NQI0 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
DDX4Q9NQI0 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 IRX5-204ENST00000560154 879 ntTSL 5 BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC24.58■■□□□ 1.53
DDX4Q9NQI0 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC24.58■■□□□ 1.52
DDX4Q9NQI0 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
DDX4Q9NQI0 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC24.57■■□□□ 1.52
DDX4Q9NQI0 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
DDX4Q9NQI0 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
DDX4Q9NQI0 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
DDX4Q9NQI0 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC24.57■■□□□ 1.52
DDX4Q9NQI0 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
DDX4Q9NQI0 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
DDX4Q9NQI0 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC24.57■■□□□ 1.52
DDX4Q9NQI0 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC24.57■■□□□ 1.52
DDX4Q9NQI0 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC24.57■■□□□ 1.52
DDX4Q9NQI0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
DDX4Q9NQI0 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
DDX4Q9NQI0 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC24.56■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms