Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TTC28Q96AY4 AL691432.3-201ENST00000621860 400 ntBASIC21.41■■□□□ 1.02
TTC28Q96AY4 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TTC28Q96AY4 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TTC28Q96AY4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TTC28Q96AY4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TTC28Q96AY4 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.41■■□□□ 1.02
TTC28Q96AY4 ST7-205ENST00000393446 2114 ntTSL 5 BASIC21.41■■□□□ 1.02
TTC28Q96AY4 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.41■■□□□ 1.02
TTC28Q96AY4 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TTC28Q96AY4 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.41■■□□□ 1.02
TTC28Q96AY4 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.4■■□□□ 1.02
TTC28Q96AY4 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TTC28Q96AY4 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TTC28Q96AY4 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TTC28Q96AY4 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TTC28Q96AY4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.4■■□□□ 1.02
TTC28Q96AY4 PVRIG2P-201ENST00000435460 978 ntBASIC21.4■■□□□ 1.02
TTC28Q96AY4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.4■■□□□ 1.02
TTC28Q96AY4 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.4■■□□□ 1.02
TTC28Q96AY4 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TTC28Q96AY4 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TTC28Q96AY4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TTC28Q96AY4 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.4■■□□□ 1.02
TTC28Q96AY4 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TTC28Q96AY4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
TTC28Q96AY4 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.39■■□□□ 1.02
TTC28Q96AY4 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.39■■□□□ 1.01
TTC28Q96AY4 AL034346.1-201ENST00000568244 1277 ntBASIC21.39■■□□□ 1.01
TTC28Q96AY4 FAM21FP-204ENST00000608637 956 ntBASIC21.39■■□□□ 1.01
TTC28Q96AY4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
TTC28Q96AY4 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TTC28Q96AY4 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TTC28Q96AY4 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TTC28Q96AY4 FAM8A6P-201ENST00000407496 1135 ntBASIC21.38■■□□□ 1.01
TTC28Q96AY4 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TTC28Q96AY4 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TTC28Q96AY4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.38■■□□□ 1.01
TTC28Q96AY4 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.38■■□□□ 1.01
TTC28Q96AY4 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TTC28Q96AY4 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TTC28Q96AY4 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TTC28Q96AY4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TTC28Q96AY4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TTC28Q96AY4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.38■■□□□ 1.01
TTC28Q96AY4 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.38■■□□□ 1.01
TTC28Q96AY4 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TTC28Q96AY4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TTC28Q96AY4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TTC28Q96AY4 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TTC28Q96AY4 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.37■■□□□ 1.01
TTC28Q96AY4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.37■■□□□ 1.01
TTC28Q96AY4 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
TTC28Q96AY4 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.37■■□□□ 1.01
TTC28Q96AY4 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TTC28Q96AY4 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TTC28Q96AY4 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TTC28Q96AY4 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
TTC28Q96AY4 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.37■■□□□ 1.01
TTC28Q96AY4 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.37■■□□□ 1.01
TTC28Q96AY4 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TTC28Q96AY4 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.37■■□□□ 1.01
TTC28Q96AY4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
TTC28Q96AY4 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
TTC28Q96AY4 AL353807.1-201ENST00000427475 662 ntBASIC21.37■■□□□ 1.01
TTC28Q96AY4 FDX1P1-201ENST00000449115 551 ntBASIC21.37■■□□□ 1.01
TTC28Q96AY4 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.37■■□□□ 1.01
TTC28Q96AY4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TTC28Q96AY4 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TTC28Q96AY4 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TTC28Q96AY4 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TTC28Q96AY4 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 KRT8P10-201ENST00000450021 1447 ntBASIC21.36■■□□□ 1.01
TTC28Q96AY4 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TTC28Q96AY4 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
TTC28Q96AY4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.35■■□□□ 1.01
TTC28Q96AY4 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.35■■□□□ 1.01
TTC28Q96AY4 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.35■■□□□ 1.01
TTC28Q96AY4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.35■■□□□ 1.01
TTC28Q96AY4 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
TTC28Q96AY4 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TTC28Q96AY4 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.35■■□□□ 1.01
TTC28Q96AY4 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TTC28Q96AY4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.35■■□□□ 1.01
TTC28Q96AY4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.35■■□□□ 1.01
TTC28Q96AY4 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TTC28Q96AY4 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.35■■□□□ 1.01
TTC28Q96AY4 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms