Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC16.66■□□□□ 0.26
CX3CL1P78423 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CX3CL1P78423 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CX3CL1P78423 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC16.66■□□□□ 0.26
CX3CL1P78423 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC16.66■□□□□ 0.26
CX3CL1P78423 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC16.66■□□□□ 0.26
CX3CL1P78423 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC16.66■□□□□ 0.26
CX3CL1P78423 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC16.66■□□□□ 0.26
CX3CL1P78423 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CX3CL1P78423 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC16.66■□□□□ 0.26
CX3CL1P78423 AC008175.2-201ENST00000612840 297 ntBASIC16.66■□□□□ 0.26
CX3CL1P78423 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC16.66■□□□□ 0.26
CX3CL1P78423 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.66■□□□□ 0.26
CX3CL1P78423 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC16.66■□□□□ 0.26
CX3CL1P78423 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CX3CL1P78423 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CL1P78423 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CL1P78423 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CL1P78423 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CL1P78423 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CL1P78423 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.65■□□□□ 0.26
CX3CL1P78423 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.65■□□□□ 0.26
CX3CL1P78423 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CL1P78423 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC16.65■□□□□ 0.26
CX3CL1P78423 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC16.65■□□□□ 0.26
CX3CL1P78423 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC16.65■□□□□ 0.26
CX3CL1P78423 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC16.65■□□□□ 0.26
CX3CL1P78423 GALNS-213ENST00000569433 723 ntTSL 3 BASIC16.65■□□□□ 0.26
CX3CL1P78423 NTF6G-201ENST00000591094 616 ntBASIC16.65■□□□□ 0.26
CX3CL1P78423 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC16.65■□□□□ 0.26
CX3CL1P78423 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CL1P78423 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CL1P78423 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.65■□□□□ 0.26
CX3CL1P78423 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CX3CL1P78423 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC16.65■□□□□ 0.26
CX3CL1P78423 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CL1P78423 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.65■□□□□ 0.26
CX3CL1P78423 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CL1P78423 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.64■□□□□ 0.26
CX3CL1P78423 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CX3CL1P78423 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CL1P78423 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CL1P78423 FEM1AP4-201ENST00000443167 1987 ntBASIC16.64■□□□□ 0.25
CX3CL1P78423 RNF165-205ENST00000588679 2904 ntBASIC16.64■□□□□ 0.25
CX3CL1P78423 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CL1P78423 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CX3CL1P78423 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CL1P78423 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CL1P78423 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC16.64■□□□□ 0.25
CX3CL1P78423 POU5F1P4-201ENST00000413175 1085 ntBASIC16.64■□□□□ 0.25
CX3CL1P78423 AC010141.2-201ENST00000452426 721 ntBASIC16.64■□□□□ 0.25
CX3CL1P78423 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC16.64■□□□□ 0.25
CX3CL1P78423 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC16.64■□□□□ 0.25
CX3CL1P78423 AP001160.3-201ENST00000601484 763 ntBASIC16.64■□□□□ 0.25
CX3CL1P78423 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CX3CL1P78423 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CX3CL1P78423 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CL1P78423 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CX3CL1P78423 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CL1P78423 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CX3CL1P78423 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CL1P78423 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CL1P78423 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.64■□□□□ 0.25
CX3CL1P78423 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CL1P78423 AC061975.6-201ENST00000579045 1553 ntBASIC16.64■□□□□ 0.25
CX3CL1P78423 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CL1P78423 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CL1P78423 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.63■□□□□ 0.25
CX3CL1P78423 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CL1P78423 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CL1P78423 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.63■□□□□ 0.25
CX3CL1P78423 LINC01521-201ENST00000504184 1943 ntBASIC16.63■□□□□ 0.25
CX3CL1P78423 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
CX3CL1P78423 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CL1P78423 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CL1P78423 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CL1P78423 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
CX3CL1P78423 KRT19P1-201ENST00000405746 1186 ntBASIC16.63■□□□□ 0.25
CX3CL1P78423 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CX3CL1P78423 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC16.63■□□□□ 0.25
CX3CL1P78423 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC16.63■□□□□ 0.25
CX3CL1P78423 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CX3CL1P78423 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CL1P78423 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CL1P78423 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CL1P78423 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CL1P78423 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.63■□□□□ 0.25
CX3CL1P78423 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC16.63■□□□□ 0.25
CX3CL1P78423 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CX3CL1P78423 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms