Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PKNOX1P55347 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
PKNOX1P55347 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PKNOX1P55347 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.28■□□□□ 0.84
PKNOX1P55347 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.28■□□□□ 0.84
PKNOX1P55347 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PKNOX1P55347 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.28■□□□□ 0.84
PKNOX1P55347 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.28■□□□□ 0.84
PKNOX1P55347 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.28■□□□□ 0.84
PKNOX1P55347 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.28■□□□□ 0.84
PKNOX1P55347 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.28■□□□□ 0.84
PKNOX1P55347 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.28■□□□□ 0.84
PKNOX1P55347 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PKNOX1P55347 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.28■□□□□ 0.84
PKNOX1P55347 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PKNOX1P55347 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PKNOX1P55347 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.27■□□□□ 0.84
PKNOX1P55347 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PKNOX1P55347 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PKNOX1P55347 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.27■□□□□ 0.84
PKNOX1P55347 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PKNOX1P55347 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PKNOX1P55347 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.27■□□□□ 0.84
PKNOX1P55347 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
PKNOX1P55347 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PKNOX1P55347 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.27■□□□□ 0.84
PKNOX1P55347 AC012414.1-201ENST00000556676 535 ntBASIC20.27■□□□□ 0.84
PKNOX1P55347 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
PKNOX1P55347 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.26■□□□□ 0.83
PKNOX1P55347 PLK5-205ENST00000642079 1969 ntBASIC20.26■□□□□ 0.83
PKNOX1P55347 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PKNOX1P55347 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.26■□□□□ 0.83
PKNOX1P55347 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
PKNOX1P55347 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.26■□□□□ 0.83
PKNOX1P55347 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.26■□□□□ 0.83
PKNOX1P55347 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.26■□□□□ 0.83
PKNOX1P55347 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.26■□□□□ 0.83
PKNOX1P55347 AL136967.2-201ENST00000623968 743 ntBASIC20.26■□□□□ 0.83
PKNOX1P55347 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKNOX1P55347 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.25■□□□□ 0.83
PKNOX1P55347 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PKNOX1P55347 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PKNOX1P55347 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PKNOX1P55347 AC121338.2-201ENST00000622535 1744 ntBASIC20.25■□□□□ 0.83
PKNOX1P55347 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.25■□□□□ 0.83
PKNOX1P55347 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PKNOX1P55347 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PKNOX1P55347 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
PKNOX1P55347 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PKNOX1P55347 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PKNOX1P55347 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.25■□□□□ 0.83
PKNOX1P55347 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.25■□□□□ 0.83
PKNOX1P55347 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.25■□□□□ 0.83
PKNOX1P55347 AC053503.5-201ENST00000601508 636 ntBASIC20.25■□□□□ 0.83
PKNOX1P55347 AL031432.3-201ENST00000607698 485 ntBASIC20.25■□□□□ 0.83
PKNOX1P55347 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PKNOX1P55347 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PKNOX1P55347 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PKNOX1P55347 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PKNOX1P55347 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.25■□□□□ 0.83
PKNOX1P55347 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.25■□□□□ 0.83
PKNOX1P55347 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
PKNOX1P55347 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
PKNOX1P55347 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.24■□□□□ 0.83
PKNOX1P55347 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.24■□□□□ 0.83
PKNOX1P55347 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.24■□□□□ 0.83
PKNOX1P55347 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.24■□□□□ 0.83
PKNOX1P55347 EEF1DP3-203ENST00000566025 782 ntBASIC20.24■□□□□ 0.83
PKNOX1P55347 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.24■□□□□ 0.83
PKNOX1P55347 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
PKNOX1P55347 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PKNOX1P55347 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.24■□□□□ 0.83
PKNOX1P55347 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKNOX1P55347 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PKNOX1P55347 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms