Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SOX2P48431 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.21■□□□□ 0.51
SOX2P48431 SF1-220ENST00000626028 704 ntTSL 2 BASIC18.21■□□□□ 0.51
SOX2P48431 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.21■□□□□ 0.51
SOX2P48431 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SOX2P48431 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SOX2P48431 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SOX2P48431 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX2P48431 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SOX2P48431 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX2P48431 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
SOX2P48431 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
SOX2P48431 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.2■□□□□ 0.5
SOX2P48431 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX2P48431 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX2P48431 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.2■□□□□ 0.5
SOX2P48431 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SOX2P48431 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX2P48431 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX2P48431 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SOX2P48431 AFG3L1P-217ENST00000557444 2447 ntBASIC18.2■□□□□ 0.5
SOX2P48431 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX2P48431 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SOX2P48431 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.19■□□□□ 0.5
SOX2P48431 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SOX2P48431 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.19■□□□□ 0.5
SOX2P48431 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SOX2P48431 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SOX2P48431 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SOX2P48431 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SOX2P48431 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SOX2P48431 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.19■□□□□ 0.5
SOX2P48431 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.19■□□□□ 0.5
SOX2P48431 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.19■□□□□ 0.5
SOX2P48431 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.19■□□□□ 0.5
SOX2P48431 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.19■□□□□ 0.5
SOX2P48431 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SOX2P48431 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SOX2P48431 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.19■□□□□ 0.5
SOX2P48431 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX2P48431 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
SOX2P48431 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SOX2P48431 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX2P48431 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SOX2P48431 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX2P48431 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SOX2P48431 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SOX2P48431 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC18.18■□□□□ 0.5
SOX2P48431 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SOX2P48431 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.18■□□□□ 0.5
SOX2P48431 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX2P48431 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
SOX2P48431 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.18■□□□□ 0.5
SOX2P48431 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SOX2P48431 AC007225.1-201ENST00000566331 1836 ntBASIC18.18■□□□□ 0.5
SOX2P48431 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SOX2P48431 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX2P48431 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.18■□□□□ 0.5
SOX2P48431 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.18■□□□□ 0.5
SOX2P48431 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SOX2P48431 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.18■□□□□ 0.5
SOX2P48431 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX2P48431 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.17■□□□□ 0.5
SOX2P48431 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX2P48431 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX2P48431 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.17■□□□□ 0.5
SOX2P48431 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.17■□□□□ 0.5
SOX2P48431 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.17■□□□□ 0.5
SOX2P48431 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX2P48431 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX2P48431 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.17■□□□□ 0.5
SOX2P48431 AC131281.2-201ENST00000520478 145 ntBASIC18.17■□□□□ 0.5
SOX2P48431 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.17■□□□□ 0.5
SOX2P48431 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.17■□□□□ 0.5
SOX2P48431 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX2P48431 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
SOX2P48431 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX2P48431 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SOX2P48431 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX2P48431 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SOX2P48431 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SOX2P48431 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.16■□□□□ 0.5
SOX2P48431 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.16■□□□□ 0.5
SOX2P48431 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms