Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.83■□□□□ 0.93
CCNFP41002 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCNFP41002 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCNFP41002 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
CCNFP41002 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNFP41002 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.82■□□□□ 0.92
CCNFP41002 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CCNFP41002 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.82■□□□□ 0.92
CCNFP41002 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CCNFP41002 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNFP41002 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.82■□□□□ 0.92
CCNFP41002 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNFP41002 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CCNFP41002 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.82■□□□□ 0.92
CCNFP41002 LINC02228-203ENST00000641970 1355 ntBASIC20.82■□□□□ 0.92
CCNFP41002 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNFP41002 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCNFP41002 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNFP41002 AC121338.2-201ENST00000622535 1744 ntBASIC20.81■□□□□ 0.92
CCNFP41002 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.81■□□□□ 0.92
CCNFP41002 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.81■□□□□ 0.92
CCNFP41002 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.81■□□□□ 0.92
CCNFP41002 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.81■□□□□ 0.92
CCNFP41002 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.81■□□□□ 0.92
CCNFP41002 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNFP41002 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNFP41002 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CCNFP41002 AC055733.4-201ENST00000638462 1354 ntBASIC20.81■□□□□ 0.92
CCNFP41002 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCNFP41002 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCNFP41002 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCNFP41002 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CCNFP41002 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CCNFP41002 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CCNFP41002 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNFP41002 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNFP41002 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCNFP41002 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.8■□□□□ 0.92
CCNFP41002 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNFP41002 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.8■□□□□ 0.92
CCNFP41002 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.8■□□□□ 0.92
CCNFP41002 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNFP41002 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNFP41002 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CCNFP41002 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CCNFP41002 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.8■□□□□ 0.92
CCNFP41002 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.8■□□□□ 0.92
CCNFP41002 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCNFP41002 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNFP41002 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNFP41002 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNFP41002 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCNFP41002 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNFP41002 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNFP41002 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNFP41002 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.79■□□□□ 0.92
CCNFP41002 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.79■□□□□ 0.92
CCNFP41002 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNFP41002 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
CCNFP41002 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNFP41002 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCNFP41002 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.79■□□□□ 0.92
CCNFP41002 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.79■□□□□ 0.92
CCNFP41002 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCNFP41002 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNFP41002 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNFP41002 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNFP41002 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.78■□□□□ 0.92
CCNFP41002 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.78■□□□□ 0.92
CCNFP41002 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNFP41002 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCNFP41002 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCNFP41002 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNFP41002 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCNFP41002 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCNFP41002 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.78■□□□□ 0.92
CCNFP41002 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCNFP41002 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.78■□□□□ 0.92
CCNFP41002 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.78■□□□□ 0.92
CCNFP41002 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.78■□□□□ 0.92
CCNFP41002 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.78■□□□□ 0.92
CCNFP41002 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNFP41002 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
CCNFP41002 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNFP41002 AC007225.1-201ENST00000566331 1836 ntBASIC20.78■□□□□ 0.92
CCNFP41002 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
CCNFP41002 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNFP41002 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNFP41002 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.78■□□□□ 0.92
CCNFP41002 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCNFP41002 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.77■□□□□ 0.92
CCNFP41002 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCNFP41002 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCNFP41002 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
CCNFP41002 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCNFP41002 AC020907.5-201ENST00000624372 1936 ntBASIC20.77■□□□□ 0.92
CCNFP41002 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CCNFP41002 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCNFP41002 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.77■□□□□ 0.92
CCNFP41002 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms