Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A1P02462 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC25.61■■□□□ 1.69
COL4A1P02462 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A1P02462 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A1P02462 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A1P02462 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC25.61■■□□□ 1.69
COL4A1P02462 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A1P02462 HLA-B-256ENST00000639848 1089 ntBASIC25.61■■□□□ 1.69
COL4A1P02462 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A1P02462 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A1P02462 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A1P02462 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC25.6■■□□□ 1.69
COL4A1P02462 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC25.6■■□□□ 1.69
COL4A1P02462 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC25.6■■□□□ 1.69
COL4A1P02462 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC25.6■■□□□ 1.69
COL4A1P02462 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A1P02462 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A1P02462 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A1P02462 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC25.6■■□□□ 1.69
COL4A1P02462 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC25.6■■□□□ 1.69
COL4A1P02462 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A1P02462 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
COL4A1P02462 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC25.6■■□□□ 1.69
COL4A1P02462 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A1P02462 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A1P02462 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A1P02462 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A1P02462 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A1P02462 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A1P02462 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC25.59■■□□□ 1.69
COL4A1P02462 AC069544.1-201ENST00000609399 999 ntBASIC25.59■■□□□ 1.69
COL4A1P02462 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A1P02462 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A1P02462 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A1P02462 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A1P02462 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
COL4A1P02462 AC092368.3-202ENST00000574180 1591 ntBASIC25.58■■□□□ 1.69
COL4A1P02462 AC242852.2-201ENST00000615738 1807 ntBASIC25.58■■□□□ 1.69
COL4A1P02462 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
COL4A1P02462 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC25.58■■□□□ 1.69
COL4A1P02462 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL4A1P02462 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL4A1P02462 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
COL4A1P02462 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC25.58■■□□□ 1.69
COL4A1P02462 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC25.58■■□□□ 1.69
COL4A1P02462 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
COL4A1P02462 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC25.58■■□□□ 1.68
COL4A1P02462 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
COL4A1P02462 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
COL4A1P02462 SOX15-203ENST00000570788 1093 ntBASIC25.58■■□□□ 1.68
COL4A1P02462 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL4A1P02462 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL4A1P02462 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL4A1P02462 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
COL4A1P02462 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL4A1P02462 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC25.57■■□□□ 1.68
COL4A1P02462 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
COL4A1P02462 AL589743.5-201ENST00000616611 1050 ntBASIC25.57■■□□□ 1.68
COL4A1P02462 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL4A1P02462 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL4A1P02462 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL4A1P02462 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC25.56■■□□□ 1.68
COL4A1P02462 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC25.56■■□□□ 1.68
COL4A1P02462 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL4A1P02462 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC25.56■■□□□ 1.68
COL4A1P02462 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC25.56■■□□□ 1.68
COL4A1P02462 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC25.56■■□□□ 1.68
COL4A1P02462 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
COL4A1P02462 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
COL4A1P02462 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL4A1P02462 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL4A1P02462 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL4A1P02462 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL4A1P02462 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC25.56■■□□□ 1.68
COL4A1P02462 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL4A1P02462 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC25.55■■□□□ 1.68
COL4A1P02462 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC25.55■■□□□ 1.68
COL4A1P02462 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL4A1P02462 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL4A1P02462 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
COL4A1P02462 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
COL4A1P02462 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC25.55■■□□□ 1.68
COL4A1P02462 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL4A1P02462 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC25.55■■□□□ 1.68
COL4A1P02462 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL4A1P02462 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC25.55■■□□□ 1.68
COL4A1P02462 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
COL4A1P02462 AC087633.2-202ENST00000565166 1439 ntBASIC25.55■■□□□ 1.68
COL4A1P02462 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL4A1P02462 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL4A1P02462 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
COL4A1P02462 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC25.55■■□□□ 1.68
COL4A1P02462 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC25.55■■□□□ 1.68
COL4A1P02462 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC25.55■■□□□ 1.68
COL4A1P02462 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL4A1P02462 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC25.55■■□□□ 1.68
COL4A1P02462 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
COL4A1P02462 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
COL4A1P02462 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
COL4A1P02462 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms