Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.83■□□□□ 0.92
SHOX2O60902 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.92
SHOX2O60902 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHOX2O60902 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SHOX2O60902 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.83■□□□□ 0.92
SHOX2O60902 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SHOX2O60902 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.83■□□□□ 0.92
SHOX2O60902 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.83■□□□□ 0.92
SHOX2O60902 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.83■□□□□ 0.92
SHOX2O60902 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SHOX2O60902 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SHOX2O60902 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SHOX2O60902 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.82■□□□□ 0.92
SHOX2O60902 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.82■□□□□ 0.92
SHOX2O60902 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 AC004987.1-201ENST00000428627 508 ntBASIC20.82■□□□□ 0.92
SHOX2O60902 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.82■□□□□ 0.92
SHOX2O60902 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.82■□□□□ 0.92
SHOX2O60902 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.82■□□□□ 0.92
SHOX2O60902 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.82■□□□□ 0.92
SHOX2O60902 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
SHOX2O60902 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHOX2O60902 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHOX2O60902 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SHOX2O60902 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHOX2O60902 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SHOX2O60902 AC005703.6-201ENST00000623265 1329 ntBASIC20.81■□□□□ 0.92
SHOX2O60902 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
SHOX2O60902 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHOX2O60902 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHOX2O60902 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.81■□□□□ 0.92
SHOX2O60902 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHOX2O60902 AC010980.1-201ENST00000587192 1142 ntBASIC20.81■□□□□ 0.92
SHOX2O60902 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SHOX2O60902 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SHOX2O60902 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.81■□□□□ 0.92
SHOX2O60902 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHOX2O60902 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHOX2O60902 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHOX2O60902 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SHOX2O60902 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.81■□□□□ 0.92
SHOX2O60902 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.8■□□□□ 0.92
SHOX2O60902 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOX2O60902 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SHOX2O60902 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SHOX2O60902 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOX2O60902 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.8■□□□□ 0.92
SHOX2O60902 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOX2O60902 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.8■□□□□ 0.92
SHOX2O60902 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.8■□□□□ 0.92
SHOX2O60902 ATP5G2P3-201ENST00000429083 425 ntBASIC20.8■□□□□ 0.92
SHOX2O60902 AL499627.2-201ENST00000606283 725 ntBASIC20.8■□□□□ 0.92
SHOX2O60902 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.8■□□□□ 0.92
SHOX2O60902 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOX2O60902 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOX2O60902 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOX2O60902 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SHOX2O60902 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOX2O60902 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.8■□□□□ 0.92
SHOX2O60902 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.8■□□□□ 0.92
SHOX2O60902 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.8■□□□□ 0.92
SHOX2O60902 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.8■□□□□ 0.92
SHOX2O60902 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.8■□□□□ 0.92
SHOX2O60902 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.79■□□□□ 0.92
SHOX2O60902 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.79■□□□□ 0.92
SHOX2O60902 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.79■□□□□ 0.92
SHOX2O60902 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.79■□□□□ 0.92
SHOX2O60902 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHOX2O60902 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHOX2O60902 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SHOX2O60902 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHOX2O60902 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.79■□□□□ 0.92
SHOX2O60902 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHOX2O60902 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.79■□□□□ 0.92
SHOX2O60902 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHOX2O60902 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHOX2O60902 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SHOX2O60902 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHOX2O60902 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SHOX2O60902 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHOX2O60902 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHOX2O60902 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHOX2O60902 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHOX2O60902 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SHOX2O60902 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
SHOX2O60902 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHOX2O60902 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms