Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 AC073314.1-201ENST00000568729 2216 ntBASIC19.95■□□□□ 0.78
SLC28A1O00337 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SLC28A1O00337 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
SLC28A1O00337 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SLC28A1O00337 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SLC28A1O00337 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SLC28A1O00337 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.95■□□□□ 0.78
SLC28A1O00337 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SLC28A1O00337 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SLC28A1O00337 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SLC28A1O00337 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SLC28A1O00337 AC142381.2-201ENST00000566120 298 ntBASIC19.95■□□□□ 0.78
SLC28A1O00337 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SLC28A1O00337 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.95■□□□□ 0.78
SLC28A1O00337 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SLC28A1O00337 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SLC28A1O00337 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SLC28A1O00337 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SLC28A1O00337 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SLC28A1O00337 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SLC28A1O00337 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SLC28A1O00337 AC011484.1-201ENST00000377652 1995 ntBASIC19.94■□□□□ 0.78
SLC28A1O00337 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SLC28A1O00337 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SLC28A1O00337 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
SLC28A1O00337 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SLC28A1O00337 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SLC28A1O00337 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.94■□□□□ 0.78
SLC28A1O00337 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.94■□□□□ 0.78
SLC28A1O00337 AC079140.4-201ENST00000507448 529 ntBASIC19.94■□□□□ 0.78
SLC28A1O00337 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.94■□□□□ 0.78
SLC28A1O00337 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.94■□□□□ 0.78
SLC28A1O00337 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.94■□□□□ 0.78
SLC28A1O00337 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SLC28A1O00337 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SLC28A1O00337 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SLC28A1O00337 AC092667.1-201ENST00000434301 2586 ntBASIC19.93■□□□□ 0.78
SLC28A1O00337 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.93■□□□□ 0.78
SLC28A1O00337 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SLC28A1O00337 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.93■□□□□ 0.78
SLC28A1O00337 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.93■□□□□ 0.78
SLC28A1O00337 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
SLC28A1O00337 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.93■□□□□ 0.78
SLC28A1O00337 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.93■□□□□ 0.78
SLC28A1O00337 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SLC28A1O00337 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.93■□□□□ 0.78
SLC28A1O00337 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.93■□□□□ 0.78
SLC28A1O00337 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SLC28A1O00337 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SLC28A1O00337 KRT87P-202ENST00000534226 1464 ntBASIC19.92■□□□□ 0.78
SLC28A1O00337 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC28A1O00337 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.92■□□□□ 0.78
SLC28A1O00337 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC28A1O00337 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC28A1O00337 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC28A1O00337 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC28A1O00337 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC28A1O00337 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.92■□□□□ 0.78
SLC28A1O00337 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SLC28A1O00337 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.92■□□□□ 0.78
SLC28A1O00337 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
SLC28A1O00337 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SLC28A1O00337 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
SLC28A1O00337 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SLC28A1O00337 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SLC28A1O00337 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SLC28A1O00337 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.92■□□□□ 0.78
SLC28A1O00337 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SLC28A1O00337 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SLC28A1O00337 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SLC28A1O00337 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.91■□□□□ 0.78
SLC28A1O00337 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.91■□□□□ 0.78
SLC28A1O00337 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SLC28A1O00337 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SLC28A1O00337 MIR6084-201ENST00000622012 110 ntBASIC19.91■□□□□ 0.78
SLC28A1O00337 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SLC28A1O00337 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SLC28A1O00337 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.91■□□□□ 0.78
SLC28A1O00337 AC027702.1-201ENST00000563810 1770 ntBASIC19.9■□□□□ 0.78
SLC28A1O00337 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SLC28A1O00337 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.9■□□□□ 0.78
SLC28A1O00337 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SLC28A1O00337 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SLC28A1O00337 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.9■□□□□ 0.78
SLC28A1O00337 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SLC28A1O00337 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SLC28A1O00337 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.9■□□□□ 0.78
SLC28A1O00337 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms