Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 VPS53-216ENST00000574029 585 ntTSL 4 BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 RARRES2P11-201ENST00000635158 484 ntBASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV41A0A0B4J266 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
TRAV41A0A0B4J266 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV41A0A0B4J266 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV41A0A0B4J266 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 DUX4L16-201ENST00000555130 1264 ntBASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 AC231657.2-201ENST00000624556 255 ntBASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV41A0A0B4J266 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 AC007322.1-201ENST00000426983 750 ntBASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 AL049796.1-201ENST00000565336 1766 ntBASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
TRAV41A0A0B4J266 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 CD44-222ENST00000526025 1052 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 AC073111.5-205ENST00000641717 521 ntBASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV41A0A0B4J266 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms