Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
PCDHA1Q9Y5I3 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PCDHA1Q9Y5I3 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PCDHA1Q9Y5I3 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC23.89■■□□□ 1.41
PCDHA1Q9Y5I3 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.89■■□□□ 1.41
PCDHA1Q9Y5I3 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PCDHA1Q9Y5I3 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.89■■□□□ 1.41
PCDHA1Q9Y5I3 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
PCDHA1Q9Y5I3 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
PCDHA1Q9Y5I3 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 CDV3P1-201ENST00000471403 739 ntBASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHA1Q9Y5I3 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 FAM21FP-204ENST00000608637 956 ntBASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC23.87■■□□□ 1.41
PCDHA1Q9Y5I3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHA1Q9Y5I3 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC23.86■■□□□ 1.41
PCDHA1Q9Y5I3 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
PCDHA1Q9Y5I3 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.86■■□□□ 1.41
PCDHA1Q9Y5I3 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.86■■□□□ 1.41
PCDHA1Q9Y5I3 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHA1Q9Y5I3 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC23.86■■□□□ 1.41
PCDHA1Q9Y5I3 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHA1Q9Y5I3 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHA1Q9Y5I3 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
PCDHA1Q9Y5I3 LINC00565-201ENST00000562710 2331 ntBASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 AC010980.2-201ENST00000587099 1412 ntBASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 MIPEPP3-201ENST00000412105 444 ntBASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHA1Q9Y5I3 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHA1Q9Y5I3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 AC007322.3-201ENST00000426526 701 ntBASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA1Q9Y5I3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms