Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC89Q8N998 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC89Q8N998 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC89Q8N998 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.53■■□□□ 1.04
CCDC89Q8N998 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC89Q8N998 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CCDC89Q8N998 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC89Q8N998 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.53■■□□□ 1.04
CCDC89Q8N998 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC89Q8N998 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC89Q8N998 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC89Q8N998 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC89Q8N998 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC89Q8N998 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC89Q8N998 RASA4CP-201ENST00000424092 1398 ntBASIC21.52■■□□□ 1.04
CCDC89Q8N998 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC89Q8N998 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC89Q8N998 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC89Q8N998 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC89Q8N998 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC89Q8N998 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC89Q8N998 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.52■■□□□ 1.04
CCDC89Q8N998 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC89Q8N998 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
CCDC89Q8N998 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
CCDC89Q8N998 AC092667.1-201ENST00000434301 2586 ntBASIC21.52■■□□□ 1.04
CCDC89Q8N998 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CCDC89Q8N998 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.52■■□□□ 1.03
CCDC89Q8N998 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC89Q8N998 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC89Q8N998 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC89Q8N998 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC89Q8N998 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
CCDC89Q8N998 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC89Q8N998 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.52■■□□□ 1.03
CCDC89Q8N998 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CCDC89Q8N998 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC89Q8N998 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CCDC89Q8N998 MIR572-201ENST00000384983 95 ntBASIC21.51■■□□□ 1.03
CCDC89Q8N998 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC89Q8N998 AF213884.3-201ENST00000563833 479 ntBASIC21.51■■□□□ 1.03
CCDC89Q8N998 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC89Q8N998 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC89Q8N998 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC89Q8N998 AC121338.2-201ENST00000622535 1744 ntBASIC21.51■■□□□ 1.03
CCDC89Q8N998 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.51■■□□□ 1.03
CCDC89Q8N998 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
CCDC89Q8N998 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC89Q8N998 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC89Q8N998 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC89Q8N998 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC89Q8N998 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC89Q8N998 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC89Q8N998 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC89Q8N998 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC89Q8N998 AC073314.1-201ENST00000568729 2216 ntBASIC21.5■■□□□ 1.03
CCDC89Q8N998 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CCDC89Q8N998 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC89Q8N998 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC89Q8N998 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
CCDC89Q8N998 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CCDC89Q8N998 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC89Q8N998 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC89Q8N998 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CCDC89Q8N998 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC89Q8N998 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CCDC89Q8N998 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC89Q8N998 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC89Q8N998 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC89Q8N998 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC89Q8N998 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC89Q8N998 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC89Q8N998 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC89Q8N998 MIR939-201ENST00000401314 82 ntBASIC21.49■■□□□ 1.03
CCDC89Q8N998 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC89Q8N998 AC091305.1-201ENST00000479476 895 ntBASIC21.49■■□□□ 1.03
CCDC89Q8N998 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC89Q8N998 AC110285.6-201ENST00000617652 491 ntBASIC21.49■■□□□ 1.03
CCDC89Q8N998 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC89Q8N998 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC89Q8N998 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC89Q8N998 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC89Q8N998 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC89Q8N998 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC89Q8N998 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC89Q8N998 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
CCDC89Q8N998 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CCDC89Q8N998 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC89Q8N998 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.48■■□□□ 1.03
CCDC89Q8N998 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC89Q8N998 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC89Q8N998 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.48■■□□□ 1.03
CCDC89Q8N998 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.48■■□□□ 1.03
CCDC89Q8N998 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC89Q8N998 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC89Q8N998 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC89Q8N998 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.48■■□□□ 1.03
CCDC89Q8N998 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
CCDC89Q8N998 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
CCDC89Q8N998 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms