Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
PKNOX1P55347 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.33■□□□□ 0.85
PKNOX1P55347 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PKNOX1P55347 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
PKNOX1P55347 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.33■□□□□ 0.85
PKNOX1P55347 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.33■□□□□ 0.85
PKNOX1P55347 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.33■□□□□ 0.85
PKNOX1P55347 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.33■□□□□ 0.84
PKNOX1P55347 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PKNOX1P55347 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
PKNOX1P55347 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
PKNOX1P55347 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.33■□□□□ 0.84
PKNOX1P55347 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
PKNOX1P55347 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PKNOX1P55347 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.33■□□□□ 0.84
PKNOX1P55347 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
PKNOX1P55347 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.32■□□□□ 0.84
PKNOX1P55347 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
PKNOX1P55347 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.32■□□□□ 0.84
PKNOX1P55347 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PKNOX1P55347 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.32■□□□□ 0.84
PKNOX1P55347 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.32■□□□□ 0.84
PKNOX1P55347 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.32■□□□□ 0.84
PKNOX1P55347 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
PKNOX1P55347 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
PKNOX1P55347 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PKNOX1P55347 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
PKNOX1P55347 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PKNOX1P55347 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.31■□□□□ 0.84
PKNOX1P55347 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PKNOX1P55347 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.31■□□□□ 0.84
PKNOX1P55347 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PKNOX1P55347 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.31■□□□□ 0.84
PKNOX1P55347 MIR939-201ENST00000401314 82 ntBASIC20.31■□□□□ 0.84
PKNOX1P55347 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.31■□□□□ 0.84
PKNOX1P55347 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.31■□□□□ 0.84
PKNOX1P55347 AC091305.1-201ENST00000479476 895 ntBASIC20.31■□□□□ 0.84
PKNOX1P55347 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PKNOX1P55347 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.31■□□□□ 0.84
PKNOX1P55347 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PKNOX1P55347 AC006128.1-201ENST00000624704 1661 ntBASIC20.31■□□□□ 0.84
PKNOX1P55347 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PKNOX1P55347 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PKNOX1P55347 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PKNOX1P55347 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PKNOX1P55347 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.31■□□□□ 0.84
PKNOX1P55347 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PKNOX1P55347 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
PKNOX1P55347 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PKNOX1P55347 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
PKNOX1P55347 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PKNOX1P55347 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.3■□□□□ 0.84
PKNOX1P55347 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PKNOX1P55347 AL391422.3-201ENST00000603791 2761 ntBASIC20.3■□□□□ 0.84
PKNOX1P55347 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PKNOX1P55347 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
PKNOX1P55347 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
PKNOX1P55347 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
PKNOX1P55347 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PKNOX1P55347 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PKNOX1P55347 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PKNOX1P55347 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.3■□□□□ 0.84
PKNOX1P55347 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.3■□□□□ 0.84
PKNOX1P55347 AF213884.3-201ENST00000563833 479 ntBASIC20.3■□□□□ 0.84
PKNOX1P55347 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
PKNOX1P55347 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.3■□□□□ 0.84
PKNOX1P55347 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PKNOX1P55347 PCDHAC2-203ENST00000615316 3011 ntBASIC20.3■□□□□ 0.84
PKNOX1P55347 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.3■□□□□ 0.84
PKNOX1P55347 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PKNOX1P55347 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
PKNOX1P55347 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PKNOX1P55347 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
PKNOX1P55347 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PKNOX1P55347 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PKNOX1P55347 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
PKNOX1P55347 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
PKNOX1P55347 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.29■□□□□ 0.84
PKNOX1P55347 AC110285.6-201ENST00000617652 491 ntBASIC20.29■□□□□ 0.84
PKNOX1P55347 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.29■□□□□ 0.84
PKNOX1P55347 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PKNOX1P55347 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
PKNOX1P55347 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PKNOX1P55347 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.29■□□□□ 0.84
PKNOX1P55347 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
PKNOX1P55347 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PKNOX1P55347 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.28■□□□□ 0.84
PKNOX1P55347 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.28■□□□□ 0.84
PKNOX1P55347 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms