Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC24.15■■□□□ 1.46
HMGCS2P54868 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
HMGCS2P54868 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC24.15■■□□□ 1.46
HMGCS2P54868 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC24.15■■□□□ 1.46
HMGCS2P54868 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC24.15■■□□□ 1.46
HMGCS2P54868 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
HMGCS2P54868 ME2-208ENST00000638937 2471 ntTSL 5 BASIC24.15■■□□□ 1.46
HMGCS2P54868 MME-217ENST00000616757 1315 ntTSL 5 BASIC24.14■■□□□ 1.46
HMGCS2P54868 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
HMGCS2P54868 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
HMGCS2P54868 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
HMGCS2P54868 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC24.14■■□□□ 1.45
HMGCS2P54868 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC24.14■■□□□ 1.45
HMGCS2P54868 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
HMGCS2P54868 UBE2SP1-201ENST00000450587 669 ntBASIC24.14■■□□□ 1.45
HMGCS2P54868 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC24.14■■□□□ 1.45
HMGCS2P54868 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC24.14■■□□□ 1.45
HMGCS2P54868 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
HMGCS2P54868 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC24.14■■□□□ 1.45
HMGCS2P54868 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
HMGCS2P54868 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC24.13■■□□□ 1.45
HMGCS2P54868 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
HMGCS2P54868 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
HMGCS2P54868 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
HMGCS2P54868 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
HMGCS2P54868 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
HMGCS2P54868 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC24.13■■□□□ 1.45
HMGCS2P54868 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC24.13■■□□□ 1.45
HMGCS2P54868 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
HMGCS2P54868 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC24.13■■□□□ 1.45
HMGCS2P54868 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
HMGCS2P54868 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
HMGCS2P54868 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC24.13■■□□□ 1.45
HMGCS2P54868 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
HMGCS2P54868 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
HMGCS2P54868 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
HMGCS2P54868 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
HMGCS2P54868 CYP21A1P-202ENST00000354927 1481 ntBASIC24.13■■□□□ 1.45
HMGCS2P54868 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
HMGCS2P54868 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
HMGCS2P54868 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGCS2P54868 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGCS2P54868 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC24.12■■□□□ 1.45
HMGCS2P54868 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGCS2P54868 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC24.12■■□□□ 1.45
HMGCS2P54868 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGCS2P54868 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC24.12■■□□□ 1.45
HMGCS2P54868 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC24.12■■□□□ 1.45
HMGCS2P54868 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC24.12■■□□□ 1.45
HMGCS2P54868 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
HMGCS2P54868 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC24.12■■□□□ 1.45
HMGCS2P54868 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
HMGCS2P54868 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGCS2P54868 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
HMGCS2P54868 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
HMGCS2P54868 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
HMGCS2P54868 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC24.11■■□□□ 1.45
HMGCS2P54868 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
HMGCS2P54868 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC24.11■■□□□ 1.45
HMGCS2P54868 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
HMGCS2P54868 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
HMGCS2P54868 SLC29A4P2-201ENST00000504749 1089 ntBASIC24.11■■□□□ 1.45
HMGCS2P54868 RPPH1-201ENST00000516869 333 ntBASIC24.11■■□□□ 1.45
HMGCS2P54868 C1QBPP2-201ENST00000528754 825 ntBASIC24.11■■□□□ 1.45
HMGCS2P54868 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC24.11■■□□□ 1.45
HMGCS2P54868 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
HMGCS2P54868 SOX15-203ENST00000570788 1093 ntBASIC24.11■■□□□ 1.45
HMGCS2P54868 AC233263.1-201ENST00000578059 224 ntBASIC24.11■■□□□ 1.45
HMGCS2P54868 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
HMGCS2P54868 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
HMGCS2P54868 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
HMGCS2P54868 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
HMGCS2P54868 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
HMGCS2P54868 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
HMGCS2P54868 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC24.1■■□□□ 1.45
HMGCS2P54868 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
HMGCS2P54868 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC24.1■■□□□ 1.45
HMGCS2P54868 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
HMGCS2P54868 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
HMGCS2P54868 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
HMGCS2P54868 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC24.1■■□□□ 1.45
HMGCS2P54868 RNF121-214ENST00000533380 870 ntTSL 3 BASIC24.1■■□□□ 1.45
HMGCS2P54868 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
HMGCS2P54868 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC24.1■■□□□ 1.45
HMGCS2P54868 FAM197Y4-202ENST00000622692 608 ntBASIC24.1■■□□□ 1.45
HMGCS2P54868 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC24.1■■□□□ 1.45
HMGCS2P54868 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
HMGCS2P54868 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC24.1■■□□□ 1.45
HMGCS2P54868 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
HMGCS2P54868 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
HMGCS2P54868 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
HMGCS2P54868 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
HMGCS2P54868 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC24.1■■□□□ 1.45
HMGCS2P54868 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC24.09■■□□□ 1.45
HMGCS2P54868 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
HMGCS2P54868 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
HMGCS2P54868 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC24.09■■□□□ 1.45
HMGCS2P54868 KRT17P3-201ENST00000420566 1262 ntBASIC24.09■■□□□ 1.45
HMGCS2P54868 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC24.09■■□□□ 1.45
HMGCS2P54868 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms