Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 AC005837.3-201ENST00000612163 286 ntBASIC20.32■□□□□ 0.84
SIX3O95343 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.32■□□□□ 0.84
SIX3O95343 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.32■□□□□ 0.84
SIX3O95343 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SIX3O95343 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.31■□□□□ 0.84
SIX3O95343 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SIX3O95343 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SIX3O95343 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.31■□□□□ 0.84
SIX3O95343 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SIX3O95343 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SIX3O95343 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SIX3O95343 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.31■□□□□ 0.84
SIX3O95343 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.31■□□□□ 0.84
SIX3O95343 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SIX3O95343 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SIX3O95343 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SIX3O95343 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SIX3O95343 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SIX3O95343 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SIX3O95343 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SIX3O95343 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
SIX3O95343 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SIX3O95343 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX3O95343 AC105265.2-201ENST00000467189 838 ntBASIC20.3■□□□□ 0.84
SIX3O95343 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.3■□□□□ 0.84
SIX3O95343 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX3O95343 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX3O95343 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX3O95343 AP005212.1-201ENST00000581547 1997 ntBASIC20.3■□□□□ 0.84
SIX3O95343 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX3O95343 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SIX3O95343 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SIX3O95343 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX3O95343 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX3O95343 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX3O95343 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SIX3O95343 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SIX3O95343 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX3O95343 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX3O95343 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SIX3O95343 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX3O95343 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX3O95343 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.29■□□□□ 0.84
SIX3O95343 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SIX3O95343 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX3O95343 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX3O95343 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.28■□□□□ 0.84
SIX3O95343 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
SIX3O95343 IRS3P-201ENST00000223076 1006 ntBASIC20.28■□□□□ 0.84
SIX3O95343 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.28■□□□□ 0.84
SIX3O95343 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SIX3O95343 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SIX3O95343 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX3O95343 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX3O95343 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX3O95343 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.28■□□□□ 0.84
SIX3O95343 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX3O95343 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX3O95343 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SIX3O95343 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
SIX3O95343 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SIX3O95343 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SIX3O95343 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SIX3O95343 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX3O95343 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX3O95343 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX3O95343 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SIX3O95343 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX3O95343 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX3O95343 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX3O95343 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.27■□□□□ 0.84
SIX3O95343 AP004607.4-201ENST00000530158 1459 ntBASIC20.27■□□□□ 0.84
SIX3O95343 AC079140.4-201ENST00000507448 529 ntBASIC20.27■□□□□ 0.84
SIX3O95343 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.27■□□□□ 0.84
SIX3O95343 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.27■□□□□ 0.84
SIX3O95343 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.27■□□□□ 0.84
SIX3O95343 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.27■□□□□ 0.84
SIX3O95343 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SIX3O95343 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX3O95343 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SIX3O95343 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
SIX3O95343 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.27■□□□□ 0.83
SIX3O95343 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SIX3O95343 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SIX3O95343 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX3O95343 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SIX3O95343 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.26■□□□□ 0.83
SIX3O95343 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SIX3O95343 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms