Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.5■□□□□ 0.87
SNX3O60493 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNX3O60493 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SNX3O60493 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.5■□□□□ 0.87
SNX3O60493 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNX3O60493 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.5■□□□□ 0.87
SNX3O60493 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.5■□□□□ 0.87
SNX3O60493 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.5■□□□□ 0.87
SNX3O60493 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNX3O60493 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNX3O60493 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SNX3O60493 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.5■□□□□ 0.87
SNX3O60493 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNX3O60493 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.49■□□□□ 0.87
SNX3O60493 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SNX3O60493 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNX3O60493 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.49■□□□□ 0.87
SNX3O60493 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNX3O60493 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
SNX3O60493 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNX3O60493 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.49■□□□□ 0.87
SNX3O60493 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNX3O60493 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.49■□□□□ 0.87
SNX3O60493 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNX3O60493 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNX3O60493 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
SNX3O60493 AC125437.2-201ENST00000625180 2167 ntBASIC20.49■□□□□ 0.87
SNX3O60493 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.49■□□□□ 0.87
SNX3O60493 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNX3O60493 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
SNX3O60493 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SNX3O60493 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.48■□□□□ 0.87
SNX3O60493 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.48■□□□□ 0.87
SNX3O60493 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SNX3O60493 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.48■□□□□ 0.87
SNX3O60493 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.48■□□□□ 0.87
SNX3O60493 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.48■□□□□ 0.87
SNX3O60493 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SNX3O60493 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.48■□□□□ 0.87
SNX3O60493 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
SNX3O60493 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SNX3O60493 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SNX3O60493 AC004408.2-201ENST00000623613 2777 ntBASIC20.48■□□□□ 0.87
SNX3O60493 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.48■□□□□ 0.87
SNX3O60493 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SNX3O60493 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
SNX3O60493 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SNX3O60493 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SNX3O60493 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SNX3O60493 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SNX3O60493 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SNX3O60493 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.47■□□□□ 0.87
SNX3O60493 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNX3O60493 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.47■□□□□ 0.87
SNX3O60493 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.47■□□□□ 0.87
SNX3O60493 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNX3O60493 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNX3O60493 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SNX3O60493 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SNX3O60493 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.47■□□□□ 0.87
SNX3O60493 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNX3O60493 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.47■□□□□ 0.87
SNX3O60493 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SNX3O60493 AP004607.7-201ENST00000527152 1677 ntBASIC20.47■□□□□ 0.87
SNX3O60493 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SNX3O60493 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.47■□□□□ 0.87
SNX3O60493 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.47■□□□□ 0.87
SNX3O60493 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SNX3O60493 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNX3O60493 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SNX3O60493 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNX3O60493 AC021242.3-201ENST00000607598 1377 ntBASIC20.46■□□□□ 0.87
SNX3O60493 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SNX3O60493 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNX3O60493 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNX3O60493 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SNX3O60493 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNX3O60493 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.46■□□□□ 0.87
SNX3O60493 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNX3O60493 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
SNX3O60493 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SNX3O60493 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNX3O60493 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.46■□□□□ 0.87
SNX3O60493 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNX3O60493 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
SNX3O60493 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNX3O60493 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNX3O60493 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.46■□□□□ 0.87
SNX3O60493 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.46■□□□□ 0.87
SNX3O60493 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SNX3O60493 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNX3O60493 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SNX3O60493 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
SNX3O60493 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.45■□□□□ 0.87
SNX3O60493 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.45■□□□□ 0.86
SNX3O60493 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SNX3O60493 AL158211.5-201ENST00000623583 2518 ntBASIC20.45■□□□□ 0.86
SNX3O60493 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SNX3O60493 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.45■□□□□ 0.86
SNX3O60493 AC010141.3-201ENST00000456659 717 ntBASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms