Protein–RNA interactions for Protein: O43805

SSNA1, Sjoegren syndrome nuclear autoantigen 1, humanhuman

Predictions only

Length 119 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1O43805 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SSNA1O43805 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
SSNA1O43805 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSNA1O43805 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC17.72■□□□□ 0.43
SSNA1O43805 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SSNA1O43805 LONRF2P2-201ENST00000439212 571 ntBASIC17.72■□□□□ 0.43
SSNA1O43805 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSNA1O43805 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.72■□□□□ 0.43
SSNA1O43805 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SSNA1O43805 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SSNA1O43805 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SSNA1O43805 REST-206ENST00000612429 1376 ntTSL 5 BASIC17.71■□□□□ 0.43
SSNA1O43805 REST-207ENST00000616975 1370 ntTSL 5 BASIC17.71■□□□□ 0.43
SSNA1O43805 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SSNA1O43805 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.71■□□□□ 0.43
SSNA1O43805 CEP120-209ENST00000515110 606 ntTSL 3 BASIC17.71■□□□□ 0.43
SSNA1O43805 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC17.71■□□□□ 0.43
SSNA1O43805 AC116562.4-201ENST00000641316 2276 ntBASIC17.71■□□□□ 0.43
SSNA1O43805 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.71■□□□□ 0.43
SSNA1O43805 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.71■□□□□ 0.43
SSNA1O43805 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.71■□□□□ 0.43
SSNA1O43805 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC17.71■□□□□ 0.43
SSNA1O43805 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC17.71■□□□□ 0.43
SSNA1O43805 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.71■□□□□ 0.43
SSNA1O43805 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SSNA1O43805 AC020907.5-201ENST00000624372 1936 ntBASIC17.7■□□□□ 0.42
SSNA1O43805 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SSNA1O43805 AC026471.1-201ENST00000564629 3026 ntBASIC17.7■□□□□ 0.42
SSNA1O43805 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
SSNA1O43805 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
SSNA1O43805 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC17.7■□□□□ 0.42
SSNA1O43805 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC17.7■□□□□ 0.42
SSNA1O43805 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SSNA1O43805 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SSNA1O43805 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.7■□□□□ 0.42
SSNA1O43805 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SSNA1O43805 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SSNA1O43805 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SSNA1O43805 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
SSNA1O43805 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.69■□□□□ 0.42
SSNA1O43805 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 DUX4L4-201ENST00000566884 1269 ntBASIC17.69■□□□□ 0.42
SSNA1O43805 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
SSNA1O43805 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC17.69■□□□□ 0.42
SSNA1O43805 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 PLK5-205ENST00000642079 1969 ntBASIC17.69■□□□□ 0.42
SSNA1O43805 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC17.69■□□□□ 0.42
SSNA1O43805 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SSNA1O43805 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.69■□□□□ 0.42
SSNA1O43805 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
SSNA1O43805 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SSNA1O43805 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SSNA1O43805 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SSNA1O43805 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.68■□□□□ 0.42
SSNA1O43805 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SSNA1O43805 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.68■□□□□ 0.42
SSNA1O43805 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.68■□□□□ 0.42
SSNA1O43805 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.68■□□□□ 0.42
SSNA1O43805 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
SSNA1O43805 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SSNA1O43805 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSNA1O43805 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SSNA1O43805 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.67■□□□□ 0.42
SSNA1O43805 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSNA1O43805 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSNA1O43805 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSNA1O43805 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSNA1O43805 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.67■□□□□ 0.42
SSNA1O43805 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SSNA1O43805 AF131216.4-201ENST00000638924 1588 ntBASIC17.67■□□□□ 0.42
SSNA1O43805 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSNA1O43805 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.67■□□□□ 0.42
SSNA1O43805 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSNA1O43805 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSNA1O43805 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSNA1O43805 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms